View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_113 (Length: 214)
Name: NF1863_high_113
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_113 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 51729582 - 51729385
Alignment:
| Q |
17 |
agtgctgactttgtttttgaaggaattgaaggaaaaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttgc |
116 |
Q |
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| T |
51729582 |
agtgctgactttgtttttgaaggaattgaaggaaaaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttgc |
51729483 |
T |
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| Q |
117 |
catttttcttgttctactcaacaagattttctcagttactccatgaaagaccaaaccaaggcctactcaaagctcttctctgcttcatattatctcca |
214 |
Q |
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| T |
51729482 |
catttttcttgttctattcaacaagattttctcagttactccatgaaagaccaaaccaaggcctactcaaagctcttctctgcttcatattatctcca |
51729385 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 19055897 - 19055989
Alignment:
| Q |
51 |
aaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttgccatttttcttgttctactcaacaagat |
143 |
Q |
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| T |
19055897 |
aaccatgcacaatgatcataaggagtttgcattggacacttccacattataggatgtggggaataccatttttcatgttctatgcaacaagat |
19055989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 19189302 - 19189210
Alignment:
| Q |
51 |
aaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttgccatttttcttgttctactcaacaagat |
143 |
Q |
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| T |
19189302 |
aaccatgcacaatggtcataaggagtttgcattggacacttccacattataggatgtggggaataccatttttcatgttctatgcaacaagat |
19189210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 6897257 - 6897120
Alignment:
| Q |
34 |
tgaaggaattgaaggaaaaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttgccatttttcttgttctac |
133 |
Q |
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| T |
6897257 |
tgaaggacctgaagggaaaccatgcaccatgatagtcagaagattgcattggatacttccccatttttggatttggggagtaccatttttcatgttctac |
6897158 |
T |
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| Q |
134 |
tcaacaagattttctcagttactccatgaaagaccaaa |
171 |
Q |
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| T |
6897157 |
tcaacaagatctgcacagttcctccatcaaacaccaaa |
6897120 |
T |
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