View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_high_116 (Length: 205)
Name: NF1863_high_116
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_116 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 3008948 - 3009136
Alignment:
| Q |
1 |
ggtacatcacattcttatttaaatgtttcttaaaatgttgtgtgcttttgacttaagaaggaaatgtgctgttgtgctaatatgactactttcaatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3008948 |
ggtacatcacattcttatttaaatgtttcttaaaatgttgtgtgcttttgacttaagaaggaaatgtgctgttgtgctaatatgactactttcaatgaaa |
3009047 |
T |
|
| Q |
101 |
attagttgaatgttttcattggtattggtattttaatatctgagttgtaagaatatgcttttaatatgtttgaatgaattcaatgtcaa |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3009048 |
attagttgaatgttttcattggtattggtattttaatatctgagttgtaagaatatgcttttaatatgtttgaatgaattcaatgtcaa |
3009136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 2924322 - 2924230
Alignment:
| Q |
87 |
tactttcaatgaaaattagttgaatgttttcattggtattggtattttaatatctgagttgtaagaatatgcttttaatatgtttgaatgaattcaatg |
185 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| | ||||||||||||| |||||| ||||| | |||| ||||||||||| ||||||| |
|
|
| T |
2924322 |
tactttcaatgaaaattagtttaatgttttc------attgtttttttaatatctgaaatgtaagtatatggatctaatttgtttgaatgatttcaatg |
2924230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 37799106 - 37799062
Alignment:
| Q |
72 |
ttgtgctaatatgactactttcaatgaaaattagttgaatgtttt |
116 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
37799106 |
ttgtgctaatatggttactttcgatgacaattagttgaatgtttt |
37799062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 1503280 - 1503334
Alignment:
| Q |
72 |
ttgtgctaatatgactactttcaatgaaaattagttgaatgttttcattggtatt |
126 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
1503280 |
ttgtgctaatatgttcacttttgatgaagattagttgaatgttttcattggtatt |
1503334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University