View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_high_14 (Length: 486)
Name: NF1863_high_14
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 7811082 - 7810621
Alignment:
| Q |
16 |
cacctttctcaatcaaactcaaatattccttgtagtgaagcaagatctccagtaacttttccaaatgatcatagaagccatcaaataatggaactgcaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7811082 |
cacctttctcaatcaaactcaaatattccttgtagtgaagcaagatctccagtaacttttccaaatgatcatagaagccatcaaataatggaactgcaag |
7810983 |
T |
|
| Q |
116 |
ttgcataaagttgcatgattcctccattgtttcatgaaaaagattgagaaagaacaatctttgagattgcatgtgtaacaaacttgcaaactgaaaactt |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7810982 |
ttgcat----------gattcctccattgtttcatgaaaaagattgagaaagaacaatctttgagattgcatgtgtaacaaacttgcaaactgaaaactt |
7810893 |
T |
|
| Q |
216 |
atataagttattttggttctctaggttgaatcctcaaccagactctaataccaattgttaaaatcaaacttgatttcactcatcttattaaccatataat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7810892 |
atataagttattttggttctctaggttgaatcctcaaccagactctaataccaattgttaaaatcaaacttgatttcactcatcttattaaccatataat |
7810793 |
T |
|
| Q |
316 |
gcctttaaatattgtccacaatacaacaaaataca----------------actatggagtttaactagttactttacttgtttcgcaagtaactatata |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7810792 |
gcctttaaatattgtccacaatacaacaaaatacaactacaacaaaatacaactatggagtttaactagttactttacttgtttcgcaagtaactatata |
7810693 |
T |
|
| Q |
400 |
tcttaatgaactaattaaattaagtcataagctagattactatattacggttaacgtattatgcatacctat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7810692 |
tcttaatgaactaattaaattaagtcataagctagattactatatgacggttaacgtattatgcatacctat |
7810621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University