View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_high_16 (Length: 464)

Name: NF1863_high_16
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_high_16
NF1863_high_16
[»] chr7 (7 HSPs)
chr7 (168-432)||(35635684-35635948)
chr7 (168-438)||(35629258-35629530)
chr7 (2-123)||(35635993-35636114)
chr7 (13-111)||(35629589-35629687)
chr7 (2-112)||(35632742-35632852)
chr7 (381-432)||(35634278-35634329)
chr7 (381-428)||(35632433-35632480)
[»] chr3 (10 HSPs)
chr3 (11-121)||(10338456-10338566)
chr3 (10-112)||(10299155-10299257)
chr3 (22-112)||(10319599-10319689)
chr3 (384-438)||(10299540-10299594)
chr3 (384-438)||(10319972-10320026)
chr3 (22-112)||(10336715-10336805)
chr3 (384-438)||(10337088-10337142)
chr3 (210-300)||(10299366-10299456)
chr3 (210-300)||(10319798-10319888)
chr3 (210-300)||(10336914-10337004)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 168 - 432
Target Start/End: Complemental strand, 35635948 - 35635684
Alignment:
Q  168 ataaaatgaaaatacatatttgtgttttttgcatcaaagacgaattttagtcattactgttatgtttgctggcttttgatttagttatgctatggtggat 267  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  35635948 ataaaatgaaaatacatatttctgttttttgcatcaaagacgaatttgagtcattactgttatgtttgctggcttttgatttagttatgctatggtgatt 35635849  T
Q  268 ttttcagggaattgcaagaaggcttgtgagtactgttctagacaaagcggctgctaagaagaatgtttgctataatgacatgatgcaagcaaatctggga 367  Q
    ||||||||||||||||| |||||||||||||||||||||||   ||||||||||||| | ||||  |  |||||||  ||||| | | || |||||||||    
T  35635848 ttttcagggaattgcaaaaaggcttgtgagtactgttctagcacaagcggctgctaataggaattctacctataataccatgaagaatgctaatctggga 35635749  T
Q  368 tgtggcgatgggtgcaggaggtattttcatgatgatataagtgtgattgtggtgttcttggacaa 432  Q
     |||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35635748 cgtggcgatgggaacaggaggtattttcatgatgatataagtgtgattgttgtgttcttggacaa 35635684  T

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Target: chr7; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 168 - 438
Target Start/End: Complemental strand, 35629530 - 35629258
Alignment:
Q  168 ataaaatgaaaatacatatttgtgttttttgcatcaaagacgaattttagtcattactgttatgtttgctggcttttgatttagttat--gctatggtgg 265  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||| ||||||    
T  35629530 ataaaatgaaaataagtatttgtgttttttgcatcaaagacgaatttgagtcattaccgttatgtttgctggcttttgatttagttatatgctttggtgg 35629431  T
Q  266 atttttcagggaattgcaagaaggcttgtgagtactgttctagacaaagcggctgctaagaagaatgtttgctataatgacatgatgcaagcaaatctgg 365  Q
    ||||| ||||||||||||| |||||||||||||||||||||||  ||||||||||||||   |||||||  || ||||  ||||||||| || |||||||    
T  35629430 attttgcagggaattgcaaaaaggcttgtgagtactgttctagcgaaagcggctgctaatgggaatgttacctgtaatagcatgatgcatgctaatctgg 35629331  T
Q  366 gatgtggcgatgggtgcaggaggtattttcatgatgatataagtgtgattgtggtgttcttggacaatacgtc 438  Q
    || |||||||||||  |||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  35629330 gacgtggcgatgggaacaggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtc 35629258  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 35636114 - 35635993
Alignment:
Q  2 cagagaacgataagtttctgatatttgcttctaatggactttgggagttcttgtcaaatgaacaagcagttgaaattgttcaaaacaatcaaagagatgt 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||| || |    
T  35636114 cagagaacgataagtttctgatatttgcttctgatggactttgggatttcttgtcaaatgaacaagcagttgaaattgttcaaaacaattcaagaaatat 35636015  T
Q  102 atgtatatatcgatttatatga 123  Q
    |||| ||||||||||| |||||    
T  35636014 atgtgtatatcgatttctatga 35635993  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 35629687 - 35629589
Alignment:
Q  13 aagtttctgatatttgcttctaatggactttgggagttcttgtcaaatgaacaagcagttgaaattgttcaaaacaatcaaagagatgtatgtatatat 111  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  35629687 aagtttcttatatttgcttctgatggactttgggatttcttgtcaaatgaacaagcagttgaaattgttcaaaacaatccaagaaatgtaagtatatat 35629589  T

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Target: chr7; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 35632852 - 35632742
Alignment:
Q  2 cagagaacgataagtttctgatatttgcttctaatggactttgggagttcttgtcaaatgaacaagcagttgaaattgttcaaaacaatcaaagagatgt 101  Q
    ||||||| ||||||||||| |||||||| |||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||| ||||    
T  35632852 cagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagcagctgaaattgttcaaaagaatccaagaaatgt 35632753  T
Q  102 atgtatatatc 112  Q
    |||||||||||    
T  35632752 atgtatatatc 35632742  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 432
Target Start/End: Complemental strand, 35634329 - 35634278
Alignment:
Q  381 gcaggaggtattttcatgatgatataagtgtgattgtggtgttcttggacaa 432  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| |||||    
T  35634329 gcaggaggtcttttcgtgatgatataagtgtgattgttgtgttctttgacaa 35634278  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Complemental strand, 35632480 - 35632433
Alignment:
Q  381 gcaggaggtattttcatgatgatataagtgtgattgtggtgttcttgg 428  Q
    ||||||||| ||||||||||||||||||||| |||||  |||||||||    
T  35632480 gcaggaggtcttttcatgatgatataagtgtcattgttttgttcttgg 35632433  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 10338456 - 10338566
Alignment:
Q  11 ataagtttctgatatttgcttctaatggactttgggagttcttgtcaaatgaacaagcagttgaaattgttcaaaacaatcaaagagatgtatgtatata 110  Q
    |||||||||  |||||||| |||  ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| |||| |||||||||||||    
T  10338456 ataagtttcatatatttgcctctgttggactttgggagttcttgtcaaatgagctagcagttgaaattgttcaaaagaatccaagaaatgtatgtatata 10338555  T
Q  111 tcgatttatat 121  Q
    || ||| ||||    
T  10338556 tccattaatat 10338566  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 10299155 - 10299257
Alignment:
Q  10 gataagtttctgatatttgcttctaatggactttgggagttcttgtcaaatgaacaagcagttgaaattgttcaaaacaatcaaagagatgtatgtatat 109  Q
    ||||||||| | |||||||||||| ||||||||||||| |||||||||||| || |||| | ||||||||||||||| ||||  ||| ||||||||||||    
T  10299155 gataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaattgttcaaaagaatcctagaaatgtatgtatat 10299254  T
Q  110 atc 112  Q
    |||    
T  10299255 atc 10299257  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 10319599 - 10319689
Alignment:
Q  22 atatttgcttctaatggactttgggagttcttgtcaaatgaacaagcagttgaaattgttcaaaacaatcaaagagatgtatgtatatatc 112  Q
    |||||||||||| ||||||||||||| |||||||||||| || |||| | ||||||||||||||| ||||  ||| |||||||||||||||    
T  10319599 atatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaattgttcaaaagaatcctagaaatgtatgtatatatc 10319689  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 10299540 - 10299594
Alignment:
Q  384 ggaggtattttcatgatgatataagtgtgattgtggtgttcttggacaatacgtc 438  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10299540 ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtc 10299594  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 10319972 - 10320026
Alignment:
Q  384 ggaggtattttcatgatgatataagtgtgattgtggtgttcttggacaatacgtc 438  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10319972 ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtc 10320026  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 10336715 - 10336805
Alignment:
Q  22 atatttgcttctaatggactttgggagttcttgtcaaatgaacaagcagttgaaattgttcaaaacaatcaaagagatgtatgtatatatc 112  Q
    |||||||||||| ||||||||||||| |||||||||||| || |||| | ||||||||||| ||| ||||  ||| |||||||||||||||    
T  10336715 atatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaattgttcgaaagaatcctagaaatgtatgtatatatc 10336805  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 10337088 - 10337142
Alignment:
Q  384 ggaggtattttcatgatgatataagtgtgattgtggtgttcttggacaatacgtc 438  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10337088 ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtc 10337142  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 10299366 - 10299456
Alignment:
Q  210 aattttagtcattactgttatgtttgctggcttttgatttagttatgctatggtggatttttcagggaattgcaagaaggcttgtgagtac 300  Q
    ||||| |||| |||| ||||| ||||| ||||||| ||||| |||| || ||||||||||| ||||||||||||| ||||||| |||||||    
T  10299366 aatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtggattttgcagggaattgcaaaaaggcttctgagtac 10299456  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 10319798 - 10319888
Alignment:
Q  210 aattttagtcattactgttatgtttgctggcttttgatttagttatgctatggtggatttttcagggaattgcaagaaggcttgtgagtac 300  Q
    ||||| |||| |||| ||||| ||||| ||||||| ||||| |||| || ||||||||||| ||||||||||| | ||||||| |||||||    
T  10319798 aatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtggattttgcagggaattgcgaaaaggcttctgagtac 10319888  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 10336914 - 10337004
Alignment:
Q  210 aattttagtcattactgttatgtttgctggcttttgatttagttatgctatggtggatttttcagggaattgcaagaaggcttgtgagtac 300  Q
    ||||| |||| |||| ||||| ||||| ||||||| ||||| |||| || ||||||||||| ||||||||||| | ||||||| |||||||    
T  10336914 aatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtggattttgcagggaattgcgaaaaggcttctgagtac 10337004  T

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