View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_19 (Length: 449)
Name: NF1863_high_19
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 51205078 - 51205523
Alignment:
| Q |
16 |
catatgctaatgtttgttccgtaattctagcaaaatgggtcaacaagtgttctccttatttcacctagaaagaaataaattgttatgcattattggtatt |
115 |
Q |
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| T |
51205078 |
catatgctaatgtttgttccgtaattctagcaaaatgggtcaacaagtgttctccttatttcacctagaaagaaataaattgttatccattattggtatt |
51205177 |
T |
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| Q |
116 |
acctttgcacttattttagcattccaatattttgagctaccttatggtaacattctagtacctacatcaaatcttcgcagcagcag------------ta |
203 |
Q |
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| T |
51205178 |
acctttgcacttattttagcattccaatattttgagctaccttatggtaacattctagtacctacatcaaatcttcgcagcagcagcagcagcagtagta |
51205277 |
T |
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| Q |
204 |
gtagtagtatacttcaacctgcatattcaccatctgccgctgaaatatataacaatattacccttttgaatcaaacaaattcagaacaccctcttgacaa |
303 |
Q |
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| T |
51205278 |
gtagtagtatacttcaacctgcatattcaccatctgcctctgaaatatataacaatattacccttttgaatcaaacaaattcagaacaccctcttgacaa |
51205377 |
T |
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| Q |
304 |
agttaatgaaactcggttgtatgaggaaaatgacactatttcaagaactgttataggtatgaatttgtcaagagaagtcaacgattcatatcataatttt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
51205378 |
agttaatgaaactcggttgtatgaggaaaatgacactatttcaagaactgttataggtatgaatttgtcaagagaagtcaacaattcatatcataatctt |
51205477 |
T |
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| Q |
404 |
catcccctttctcctgcaattgcgccaacatatttaactccaccac |
449 |
Q |
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| T |
51205478 |
catcccctttctcctgcaattgcgccaacatatttaactccaccac |
51205523 |
T |
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