View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_22 (Length: 438)
Name: NF1863_high_22
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 7150902 - 7150486
Alignment:
| Q |
1 |
gttgatgaggtgcgtatgcagttgctacaacttgtagccttgtttctatgtcatggcaatcctttaattgattgcttcatcaagaagaatccttgtgtgt |
100 |
Q |
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| T |
7150902 |
gttgatgaggtgcgtatgcagttgctacaacttgtagccttgtttctatgtcatggcaatcctttaattgattgcttcatcaagaagaatccttgtgtgt |
7150803 |
T |
|
| Q |
101 |
ctgacatcgagttaaatgtaacatgcgaggctgaaagtgacaattattatggtgtcacatattttgtatctttcatacgtacggtcagataaataaacaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7150802 |
ctgacatcaggttaaatgtaacatgcgaggctgaaagcgacaattattatggtgtcacatattttgtatctttcatacgttcggtcagataaataaacaa |
7150703 |
T |
|
| Q |
201 |
tactggtataaaagacaattttatgttggttactcttatttaaaatatatccttcccatgttcattaacatatcaatttcagttatatattatgtgtggg |
300 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7150702 |
tactagtataaaagacaattttatgttagttactcttatttaaaatttatccttcccatgttcattaacatatcaatttcagt----tattatgtgtggg |
7150607 |
T |
|
| Q |
301 |
aatagggatcttgttccctagactcatgcattcacctaatcggt-attattagattgagatcagcgttcgatatccatcaaacaatcaataaaatggtga |
399 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7150606 |
aatagggatcttgttccctagattcatgcattcacctaatcgatgattattggattgagatcagcgttcgatatccatcaaacaatcaataaaatggtga |
7150507 |
T |
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| Q |
400 |
atacgtagaatgaatccttat |
420 |
Q |
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||||||||||||||||||||| |
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| T |
7150506 |
atacgtagaatgaatccttat |
7150486 |
T |
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