View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_25 (Length: 432)
Name: NF1863_high_25
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 55993153 - 55993579
Alignment:
| Q |
1 |
attgagagataacactagtaaaatctgagtcattggatcgtccaccacgacnnnnnnntgtgataatcaatcaatcttaaacattttaaggtttttagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55993153 |
attgagagataacactagtaaaatctgagtcattggatcgtccaccacgacaaaaaa-tgtgataatcaatcaatcttaaacattttaaggtttttagaa |
55993251 |
T |
|
| Q |
101 |
tggccatttggaagcatcggagacattattgcctgtttttatggatgatttctgaacttcctcaatg----------tcttcttcatgtttaattgaacg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
55993252 |
tggccatttggaagcatcggagacattattgcctgtatttatggatgatttctgaacttcctcaatcgacaacgtcttcttcttcatggttaattgaacg |
55993351 |
T |
|
| Q |
191 |
aaacgaaatttgaacaaccttgtcaggtatatccaatcgttctcttacactacttcttcttgttccttttaaaatttcaatcgatattatactatttcaa |
290 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55993352 |
aaacgaaatttgaacaaccttgtcaggtatatccaatcgttttcttacactacttcttcttgttccttttaaaatttcaatcgatattatactatttcaa |
55993451 |
T |
|
| Q |
291 |
taatgtattgttgatattgatttatagcctataactattactctatattttctttctaattaatctgtaaacacattagtttctaacgttgaatttcaaa |
390 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55993452 |
taatgtattgttgatattgatttatagcctataactattactctatattttctttctaattaatctgtaaacacattagtttctaacgttgaatttcaaa |
55993551 |
T |
|
| Q |
391 |
tttaatggtagttgtaattgttattgtt |
418 |
Q |
| |
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||||||||||||||||||||||| |||| |
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|
| T |
55993552 |
tttaatggtagttgtaattgttaatgtt |
55993579 |
T |
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