View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_26 (Length: 431)
Name: NF1863_high_26
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 13558341 - 13558751
Alignment:
| Q |
16 |
aaaatgaaggaggttgagaaaactcaggatgtcaagattaatgttaagattcaagattgtagagaagaagaagaa---------taaggttttgatagtt |
106 |
Q |
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| T |
13558341 |
aaaatgaaggaggttaaggaaattcaggatgtcaagattaatgttaagattcaagattgtagagaagaagaagaagaagaagaataaggttttgatagtt |
13558440 |
T |
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| Q |
107 |
agtcgctaacttagcattgagactttaacttttcactgtagtagtagtagttacttgaaaagcttaggattgagattgactgtgtatgttttgaattgct |
206 |
Q |
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| T |
13558441 |
agtcgctgacttagcattgagactttaacttttcactgta-tagtagtagttacttgaaaagcttaggattgagattgactgtgtatgttttgaattgct |
13558539 |
T |
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| Q |
207 |
tgattaccattatccaatactatttcactttatgttcataaagtttgcattgaatatgtttacttaatttgtttttgtttaccannnnnnnctaatttta |
306 |
Q |
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| T |
13558540 |
tgattaccattatccaatactatttcactttatgttcataaagtttgcattgaatatgtttacttaatttgtttttgtttaccatttttttctaatttta |
13558639 |
T |
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| Q |
307 |
gtagcatctttgaaaactttgcttcgatatgtggttaaaacctttggagatctagacatcttgaaatgattttgtaaaagaaggttgaaggtagagtatt |
406 |
Q |
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| T |
13558640 |
gtagcatctttgaaaactttgcttcgatatgtggttaaaaccgttggagatctagacatcttgaaatgattttgtaaaagaaggttgtaggtagagtatt |
13558739 |
T |
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| Q |
407 |
ggatcgggagaa |
418 |
Q |
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| T |
13558740 |
ggatcgggagaa |
13558751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 20243163 - 20243091
Alignment:
| Q |
298 |
ctaattttagtagcatctttgaaaactttgcttc--gatatgtggttaaaacctttggagatctagacatctt |
368 |
Q |
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| T |
20243163 |
ctaattttagtagcttctttgaaaactttgcttccagatatgtggttaaaaccgtaggagatctagacatctt |
20243091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 17665067 - 17665188
Alignment:
| Q |
43 |
gatgtcaagattaatgttaagattcaagattgtagagaagaagaagaataaggttttgatagttagtcgctaacttagcattgagactttaacttttcac |
142 |
Q |
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| T |
17665067 |
gatgtgaagattaatgtcaagattcaagattgtag---agaagaagaataagattttgatagtga----ctaacttaatatagagactttaacttttcac |
17665159 |
T |
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| Q |
143 |
tgtagtagtagtagttacttgaaaagcttaggatt |
177 |
Q |
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| T |
17665160 |
t------gtaatagttacttgaaaagcttaggatt |
17665188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 20243349 - 20243258
Alignment:
| Q |
192 |
atgttttgaattgcttgattaccattatccaatactatttcactttatgttcataaagtttgcattgaatatgtttacttaatttgtttttgt |
284 |
Q |
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| T |
20243349 |
atgttttgaattccttgactatcattatccaatactatttaagtttataatcat-aagtttgcattgaaaatggttactcaatgtgttgttgt |
20243258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 20244054 - 20243964
Alignment:
| Q |
44 |
atgtcaagattaatgttaagattcaagattgtagagaagaagaagaataaggttttgatagttagtcgctaacttagcattgagactttaacttttca |
141 |
Q |
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| T |
20244054 |
atgtgaagattattgtcaagattcaagattttagagaaga---agaataaggttttgatagtga----ctaacttagcataaagattttaacttttca |
20243964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 14680267 - 14680146
Alignment:
| Q |
43 |
gatgtcaagattaatgttaagattcaagattgtagagaagaagaagaataaggttttgatagttagtcgctaacttagcattgagactttaacttttcac |
142 |
Q |
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| T |
14680267 |
gatgtgaagattaatgtcaagattcaagactgtagagaaga---agaataaggttttgatagtga----ctaacttaatatagagactttaacttttcac |
14680175 |
T |
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| Q |
143 |
tgtagtagtagtagttacttgaaaagcttaggatt |
177 |
Q |
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| ||| |||||||||||||||||||||||| |
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| T |
14680174 |
t------gtaatagttacttgaaaagcttaggatt |
14680146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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