View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_29 (Length: 412)
Name: NF1863_high_29
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 32065240 - 32064863
Alignment:
| Q |
17 |
aaaacaagtgtcaatgtttcatattgcaatacagttattattctgttaaagaaacagaaactattctaatatatatgcagccagctacagtctttaagaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
32065240 |
aaaacaagtgtcaatgtttcatattgcaatacagttattattctgttaaagaaacagaaactattctaatatat--gcagccaggtacagtctttaagaa |
32065143 |
T |
|
| Q |
117 |
agacatcctaatcttgatcttaacttgtaggccagtgattgattgggccaagagtgctggtgctaagcaattcttgttcatcagtagtgctggaatctac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065142 |
agacatcctaatcttgatcttaacttgtaggccagtgattgattgggccaagagtgctggtgctaagcaattcttgttcatcagtagtgctggaatctac |
32065043 |
T |
|
| Q |
217 |
aaaacgacagatgaacctccccatgttgaaggggtatgtaaaagtttctaatgcagcatttctataaccattttgctgataacaattattgtaatctaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32065042 |
aaaacgacagatgaacctccccatgttgaaggggtatgtaaaagtttctaatacagtatttctagaaccattttgctgataacaattattgtaatctaaa |
32064943 |
T |
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| Q |
317 |
gataaaaatcactggagcaggatgctgtcaaagcagatgctggtcatgttggagttgagaaatacattgaagaaactttt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064942 |
gataaaaatcactggagcaggatgctgtcaaagcagatgctggtcatgttggagttgagaaatacattgaagaaactttt |
32064863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 111 - 289
Target Start/End: Complemental strand, 51281304 - 51281125
Alignment:
| Q |
111 |
taagaaagacatcctaatcttgatcttaacttgtaggccagtgattgattgggccaagagtgctggtgctaagcaattcttgttcatcagtagtgctgga |
210 |
Q |
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||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
51281304 |
taagacagacatcctaatctcaatctaaacttgtaggccagtgatcgattgggccaagagtactggtgccaagcaattcttgttcatcagtagtgctgga |
51281205 |
T |
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| Q |
211 |
atctacaaaacgacagatgaacctccccatgttgaaggggtatgtaaaa-gtttctaatgcagcatttctataaccattt |
289 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||| |
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| T |
51281204 |
atctacaaaatgacagatgaaattccccatgttgaaggggtatgtaaaacgttcctaatacagcatttctaaaaccattt |
51281125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 51281106 - 51281061
Alignment:
| Q |
352 |
gatgctggtcatgttggagttgagaaatacattgaagaaacttttt |
397 |
Q |
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|||| ||||||||||||||||||||||| | | ||||||||||||| |
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| T |
51281106 |
gatgttggtcatgttggagttgagaaatgcgtcgaagaaacttttt |
51281061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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