View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_33 (Length: 393)
Name: NF1863_high_33
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 36456014 - 36455638
Alignment:
| Q |
1 |
caaccaaaacaccatgagcaatttgacaaccatagtttttctttctcaacttatgattatcataatctgtaaaattactaccaaaaccactagcatcaac |
100 |
Q |
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| T |
36456014 |
caaccaaaactccatgagcaatttgacaaccatagtttttctttctcaacttatgattatcataatctgtaaaattactaccaaaaccactagcatcaac |
36455915 |
T |
|
| Q |
101 |
aactaaactcccttttaactttgttccatcatcacaaacaacaatagactcaaactcatgatgcttaatctcccatactttagccttgtaaaatctaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455914 |
aactaaactcccttttaactttgttccatcatcacaaacaacaatagactcaaactcatgatgcttaatctcccatactttagccttgtaaaatctaact |
36455815 |
T |
|
| Q |
201 |
ccgttaaaaacacaacctttaaccaatttctccttaagtttcttcctactaacccttccatagcaacgatccaaatactttgttttgttatcatcgatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455814 |
ccgttaaaaacacaacctttaaccaatttctccttaagtttcttcctactaacccttccatagcaacgatccaaatactttgttttgttatcatcgatat |
36455715 |
T |
|
| Q |
301 |
aaatagaagccataggccatgttttatctaaacaatcttctagcccaagtccttcaaactcatccaaccacacacca |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455714 |
aaatagaagccataggccatgttttatctaaacaatcttctagcccaagtccttcaaactcatccaaccacacacca |
36455638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 6 - 377
Target Start/End: Original strand, 36462562 - 36462927
Alignment:
| Q |
6 |
aaaacaccatgagcaatttgacaaccatagtttttctttctcaacttatgattatcataatctgtaaaattactaccaaaaccactagcatcaacaacta |
105 |
Q |
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||||| |||| |||||||||| |||||||||||||| | |||||||| |||||| || |||| ||||| |||||||||||||||||||| |||| |
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| T |
36462562 |
aaaactccataagcaatttgaaaaccatagtttttc------accttatgatcatcatattcaataaatttacttccaaaaccactagcatcaactacta |
36462655 |
T |
|
| Q |
106 |
aactcccttttaactttgttccatcatcacaaacaacaatagactcaaactcatgatgcttaatctcccatactttagccttgtaaaatctaactccgtt |
205 |
Q |
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|||||||||| || | | |||||| |||||||||||||||||||||||||||||||||| ||| | | | | || ||||| ||||||||||| ||||| |
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| T |
36462656 |
aactccctttcaaatctactccatcgtcacaaacaacaatagactcaaactcatgatgctcaatttgcattgcctttgccttataaaatctaacaccgtt |
36462755 |
T |
|
| Q |
206 |
aaaaacacaacctttaaccaatttctccttaagtttcttcctactaacccttccatagcaacgatccaaatactttgttttgttatcatcgatataaata |
305 |
Q |
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||||||||||||||||||||| ||||| ||||||||| | || |||||||||| || ||||||||||||||||| || | ||||||| ||||||||| |
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| T |
36462756 |
aaaaacacaacctttaaccaagttctctttaagtttccttttattaacccttccgtaacaacgatccaaatacttggtggttctatcatcaatataaata |
36462855 |
T |
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| Q |
306 |
gaagccataggccatgttttatctaaacaatcttctagcccaagtccttcaaactcatccaaccacacacca |
377 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |
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| T |
36462856 |
gaagttataggccatgttttatctaaacaatcttctagcccaagaccttcaaactcatcaaaccaaacacca |
36462927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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