View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_34 (Length: 392)
Name: NF1863_high_34
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 53034064 - 53034419
Alignment:
| Q |
19 |
aacacacacggtatgctcaaattatttataattatatcaaccgttgattttctactttgaacaggaatatgttccaaaacactgtggtgtggctccaaag |
118 |
Q |
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| T |
53034064 |
aacacacacggtatgctcaaattattgataattatatcaaccgctgattttctactttgaacaggaatatgttccaaaacactgtggtgtggctccaaag |
53034163 |
T |
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| Q |
119 |
ctaagctgggaaatggagcaacagttagtcaacacagcaaagttagatatttctcgttgactatattaatccacaattatactaatgcaccgtcaaggac |
218 |
Q |
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| T |
53034164 |
ctaagctgggaaatggagcaacagttagtcaacacagcaaagttagatatttctcgttgactatattaatccacaattatactaatgcaccgtcaaggac |
53034263 |
T |
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| Q |
219 |
cctacattttagtatttagccacaacccgtatagatgagtaagtttcacagattaattggacgaccaatatttatagtccttttaatttgtttagttatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53034264 |
cctacattttagtatttagccacaacccgtatagatgagtaagtttcacagattaattggacgaccaatatttatagtccttttaatttgtttagttatg |
53034363 |
T |
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| Q |
319 |
gatttaaatttatggttcatgctcaagatttcctgtattagttcttgcttttgttc |
374 |
Q |
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| T |
53034364 |
gatttaaatttatggttcatgttcaagatttcctgtattagttcttgcttttgttc |
53034419 |
T |
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