View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_high_39 (Length: 374)
Name: NF1863_high_39
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 26 - 362
Target Start/End: Complemental strand, 53985440 - 53985105
Alignment:
| Q |
26 |
tccatttgaatcttgtgcgtttcatgtcttacgaagaatttagcaggtttttcctaggctgtcccattgtagaggagttgcaaacaagtaatgtatatgc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53985440 |
tccatttgaatcttgtgcgtttcatgtct-acgaagaatttagcaggtttttcctaggctgtcccattctagaggagttgcaaacaagtaatgtatatgc |
53985342 |
T |
|
| Q |
126 |
acatcatccgataacgaagattcctgggagaattcaacccttgtcccgtttggcaagagcaactatttctggaggaaacctatatattaatctcttcttg |
225 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53985341 |
acatcctccgataacgaagattcctgggagaattcaacccttgtcccatttggcaagagcaactatttctggaggtaacctatatattaatctcttcttg |
53985242 |
T |
|
| Q |
226 |
ctgtctgcatgtacagattctgagttataaagtggtatgatattgtatatatgaattaaatcttaaaagttgttaggggagattgggtttctaatgaaat |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
53985241 |
ctgtctgcatgtacagattctgagttataaagtggtatgatattgtatatatgaattaaatcttaaaagttgttaggtgtgattgggtttctaatgaaat |
53985142 |
T |
|
| Q |
326 |
atctttataatacataaagatatggcacctccatctc |
362 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
53985141 |
atctttataatacatacagatatggaacctccatctc |
53985105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University