View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_40 (Length: 372)
Name: NF1863_high_40
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 26991210 - 26991566
Alignment:
| Q |
1 |
gaagtagcaatcgacagaaacataaaagagtagcccaaataatcacaaaaaacagtagcaggacctgctcatgaagaaaacaaaattcaaattattgcgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26991210 |
gaagtagcaatcgacagaaacataaaagagtagcccaaataatcacaaaaaacagtagcaggacctgctcatgaagaaaacaaaattcaaattattgggc |
26991309 |
T |
|
| Q |
101 |
aatttcaacaattaaacagtgaatgtcataaaatcataaaaatacctaaagcagcaagttcaatcgaacttccttgaccaacaacagcagtatcaatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991310 |
aatttcaacaattaaacagtgaatgtcataaaatcataaaaatacctaaagcagcaagttcaatcgaacttccttgaccaacaacagcagtatcaatgag |
26991409 |
T |
|
| Q |
201 |
actcatcaacggtccgcataaccaaagaccaattgcaggtccagtaaataaaacaatttccttcatctgaatccatatactctgctcaaccagttccttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991410 |
actcatcaacggtccgcataaccaaagaccaattgcaggtccagtaaataaaacaatttccttcatctgaatccatatactctgctcaaccagttccttc |
26991509 |
T |
|
| Q |
301 |
acttcttcttcttgtgcttgttccttagaagaaacctcgctgatttgatctttttct |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991510 |
acttcttcttcttgtgcttgttccttagaagaaacctcgctgatttgatctttttct |
26991566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 27005656 - 27005965
Alignment:
| Q |
1 |
gaagtagcaatcgacagaaacataaaagagtagcccaaataatcacaaaaaacagtagcaggacctgctcatgaagaaaacaaaattcaaattattgcgc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
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|
| T |
27005656 |
gaagtggcaatcgacagaaacataaaagagtaacccaaataatcacaaaaaacagtagcaggacctgctcatgtagaaaacgaaattcacattattgcgg |
27005755 |
T |
|
| Q |
101 |
aatttcaacaattaaacagtgaatgtcataaaatcataaaaatacctaaagcagcaagttcaatcgaacttccttgaccaacaacagcagtatcaatgag |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
27005756 |
aatttcaagaattaaacagtcaatgtgataaaatcatataaatacctaaagcagcaagttcaattgaacttccttgaccaacaacagctgtatcaatgag |
27005855 |
T |
|
| Q |
201 |
actcatcaacggtccgcataaccaaagaccaattgcaggtccagtaaataaaacaatttccttcatctgaatccatatactctgctcaaccagttccttc |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27005856 |
actcatcaacggtccacataaccaaagaccaatagcaggtccagtaaacaatacaatttccttcatctgaatccatatactctgctcaaccagttccttc |
27005955 |
T |
|
| Q |
301 |
acttcttctt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
27005956 |
acttcttctt |
27005965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 26976249 - 26975935
Alignment:
| Q |
1 |
gaagtagcaatcgacagaaacataaaagagtagcccaaataatcacaaaaaacagtagcaggacctgctcatgaagaaaacaaaattcaaattattgcgc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
26976249 |
gaagtagcaatcgacaaaaacataaacaagtagcccaaataatcgcaaaaaacagtagcaggacctgctcatgtagaaaacaaaattcacattattgcgg |
26976150 |
T |
|
| Q |
101 |
aatttcaacaattaaacagtgaatgtcataaaatcataaaaatacctaaagcagcaagttcaatcgaacttccttgaccaacaacagcagtatcaatgag |
200 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
26976149 |
aatttcaa-aattaaacagtgaatgtgataaaatcataaaaatacctaaagcagcaagttcaattgaacttccttgaccaacaacagcggtatcaatgag |
26976051 |
T |
|
| Q |
201 |
actcatcaacggtccgcataaccaaagaccaattgcaggtccagtaaataaaacaatttccttcatctgaatccatatactctgctcaacc---agttcc |
297 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
26976050 |
actcatcaacggtccacataaccaaagaccaatagcaggtccagtaaacaatacaatttccttcatctgaatccatatactttgctcaaccagtagttcc |
26975951 |
T |
|
| Q |
298 |
ttcacttcttcttctt |
313 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26975950 |
ttcacttcttcttctt |
26975935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 26946473 - 26946612
Alignment:
| Q |
141 |
aatacctaaagcagcaagttcaatcgaacttccttgaccaacaacagcagtatcaatgagactcatcaacggtccgcataaccaaagaccaattgcaggt |
240 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||| |||||||||||| || | ||||||||||||||| |||| |||||| ||| |||||||| |
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|
| T |
26946473 |
aatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaagtccagttgcaggt |
26946572 |
T |
|
| Q |
241 |
ccagtaaataaaacaatttccttcatctgaatccatatac |
280 |
Q |
| |
|
| |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
26946573 |
gctgtaaatttaacaatttccttcaattgaatccatatac |
26946612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 26954273 - 26954337
Alignment:
| Q |
142 |
atacctaaagcagcaagttcaatcgaacttccttgaccaacaacagcagtatcaatgagactcat |
206 |
Q |
| |
|
||||||||||||||||| || | |||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
26954273 |
atacctaaagcagcaagctcggttgaacttccctgaccaacaacagcagtatctatgaggctcat |
26954337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 27005965 - 27005997
Alignment:
| Q |
325 |
ttagaagaaacctcgctgatttgatctttttct |
357 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
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|
| T |
27005965 |
ttagaagaaacctcgctgatttgaactttttct |
27005997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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