View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_48 (Length: 334)
Name: NF1863_high_48
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 41778133 - 41777824
Alignment:
| Q |
1 |
taacctattgtcgcaatcttcataatcttagaaggcactggtgtgatttgggtgccatcaaagagttgtaagctatgttcaacacttgactctaaaacac |
100 |
Q |
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| T |
41778133 |
taacctattgtcgcaatcttcataatcttagaaggcactggtgtgatttgggtgccatcaaagagttgtaagttatgttcaacacttgactctaaaacac |
41778034 |
T |
|
| Q |
101 |
tggtttctgcatcaactgataatccgttgaagatttgggactgggatctcaataaaacatcgcctgtgggtcaaccaactagtgtttgtagcttaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41778033 |
tggtttctgcatcaactgataatccgttgaagatttgggactgggatctcaataaaacatcgcctgtgggtcaaccaactagtgtttgtagcttaacctt |
41777934 |
T |
|
| Q |
201 |
gtcagagcatactaatgagaaggtttggtgttaaatttcatagtattatttggaaattatgttagtggtatcttcaagtgtttgtgcatcacaatttaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41777933 |
gtcagagcatactaatgagaaggtttggtgttaaatttcatagtattatttggaaattatgttagtggtatcttcaagtgtttgtgcatcacaatttaaa |
41777834 |
T |
|
| Q |
301 |
gtttatttac |
310 |
Q |
| |
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||| |||||| |
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| T |
41777833 |
gttcatttac |
41777824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 23602762 - 23602712
Alignment:
| Q |
213 |
taatgagaaggtttggtgttaaatttcatagtattatttggaaattatgtt |
263 |
Q |
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| T |
23602762 |
taatgagaaggtttggtgccaagtttcatagtattatttggaaattgtgtt |
23602712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 2309132 - 2309184
Alignment:
| Q |
88 |
gactctaaaacactggtttctgcatcaactgataatccgttgaagatttggga |
140 |
Q |
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|||||| ||||||| ||||||||||| ||||||||| | |||||||| ||||| |
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| T |
2309132 |
gactctgaaacacttgtttctgcatctactgataattcattgaagatctggga |
2309184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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