View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_high_49 (Length: 323)

Name: NF1863_high_49
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_high_49
NF1863_high_49
[»] chr2 (1 HSPs)
chr2 (11-304)||(43815064-43815351)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 43815351 - 43815064
Alignment:
Q  11 acatcatcagtcaatacattcggcgtattcgtaacccaaattcctttctctctgcaattcttcagatcaattttatcaaatccaacgctgtaagtagaca 110  Q
    |||||||||||||| |||| ||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |    
T  43815351 acatcatcagtcaacacatccggcgtattcgtaacacaaatccctttctccctgcatttcttcagatcaattttatcaaatccaacactgtaagtagaaa 43815252  T
Q  111 caatctcaagattaggaagagaatcgattgtgtttgcgtcggctccgattttggtgctgcaaaccaatgcgcgaatggaatttgcgtgggtttcagacaa 210  Q
    ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| || ||    
T  43815251 caatctcaagattaggaagagaatcgattgtatttgcatccgctccgattttggtgttgcaaaccaatgcacgaattgaatttgcgtgggtttctgagaa 43815152  T
Q  211 ggattggaaggaaggatagttccagagtttgaagaggttgaaacggttggaattggaaagttgttcttcgaggtttgtgttcattggatatgtc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      |||| ||||||||||||||||||||||||||||| ||||||    
T  43815151 ggattggaaggaaggatagttccagagtttgaagaggttgaaacggt------tggagagttgttcttcgaggtttgtgttcattgggtatgtc 43815064  T

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