View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_high_52 (Length: 320)

Name: NF1863_high_52
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_high_52
NF1863_high_52
[»] chr3 (1 HSPs)
chr3 (11-305)||(24260093-24260375)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 24260093 - 24260375
Alignment:
Q  11 atgaagattttgtttggtcaattgaggttccactgtctggaaaattcatcattgatgttgatttccttgatttgaagattgcaggcccagatgtatatgc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24260093 atgaagattttgtttggtcaattgaggttccactgtctggaaaattcatcattgatgttgatttccttgatttgaagattgcaggcccagatgtatatgc 24260192  T
Q  111 tcaagacttatcttttattattattgattttctatgatattcactgcaaatgataatcatttagatacaattagaatgtgacagtatagctaaaatcaat 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24260193 tcaagacttatcttttattattattgattttctattatattcactgcaaatgataatcatttagatacaattagaatgtgacagtatagctaaaatcaat 24260292  T
Q  211 tttggggtagtaattggatttagtaatccccttttataatcatgagcatttaattaatt-ctatgttcataatcaccaatgatgaatcagaatgat 305  Q
    |||||||             ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  24260293 tttgggg-------------tagtaatccccttttataatcatgagcatttaattaattcctttgttcataatcaccaatgatgaatcagaatgat 24260375  T

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