View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_high_53 (Length: 319)
Name: NF1863_high_53
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_53 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 36205433 - 36205097
Alignment:
| Q |
1 |
tcgtaaatcttatgggtacctttgttctccattttctttattaattttaaattgttgctgcttaatcttgt--------------ttatgtacaatttct |
86 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36205433 |
tcgtaaatcttatgtgtacctttgttctccattttctttattaattttaaattgttgctgcttaatcttgtatatgcaatattgtttatgtacaatttct |
36205334 |
T |
|
| Q |
87 |
ttacgcttcttttttatagtagacggtctatggtctagttagtttatgtcatgattgttattttaactaaaatttcgtagtagtgctaatggaaaaacgt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36205333 |
ttacgcttcttttttatagtagacggtctatggtctagttagtttatgtcatgattgttattttaactaaaatttcgtagtagtgctaatggaaaaacgt |
36205234 |
T |
|
| Q |
187 |
ttgt----taaagagagacagcagcactatctactagtttcattagtttcgttggcaccactctctatcagtgtaactaaattttggaaaggttttagaa |
282 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36205233 |
gtgtgcactaaagagagacagcagcactatctactagtttcattagtttcgttggcaccactctctatcagtgtaactaaattttggaaaggttttagaa |
36205134 |
T |
|
| Q |
283 |
agatggtgtatgctaccaatttcttaaattctatctt |
319 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36205133 |
atatggtgtatgctaccaatttcttaaattctatctt |
36205097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University