View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_high_55 (Length: 314)

Name: NF1863_high_55
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_high_55
NF1863_high_55
[»] chr3 (2 HSPs)
chr3 (1-304)||(7053111-7053414)
chr3 (2-298)||(38939205-38939501)
[»] chr8 (1 HSPs)
chr8 (2-304)||(13378104-13378406)
[»] scaffold0256 (1 HSPs)
scaffold0256 (2-298)||(9163-9459)
[»] chr6 (11 HSPs)
chr6 (2-298)||(16781118-16781414)
chr6 (79-253)||(16658073-16658241)
chr6 (79-253)||(16867932-16868100)
chr6 (79-255)||(17069568-17069738)
chr6 (79-253)||(16837741-16837909)
chr6 (79-253)||(16788031-16788198)
chr6 (80-290)||(18806120-18806330)
chr6 (79-253)||(16797230-16797398)
chr6 (80-304)||(16987467-16987685)
chr6 (90-290)||(18873124-18873324)
chr6 (90-177)||(16843967-16844054)
[»] scaffold0133 (4 HSPs)
scaffold0133 (79-253)||(12913-13081)
scaffold0133 (79-253)||(8571-8739)
scaffold0133 (80-135)||(26946-27001)
scaffold0133 (197-298)||(18074-18175)
[»] scaffold0144 (1 HSPs)
scaffold0144 (79-253)||(37551-37719)
[»] scaffold0230 (1 HSPs)
scaffold0230 (90-290)||(4700-4900)
[»] scaffold0511 (1 HSPs)
scaffold0511 (193-290)||(9380-9477)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 7053111 - 7053414
Alignment:
Q  1 taaaatcctacacttcatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagc 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  7053111 taaaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcaaaaaaaggttcaagaagttttgcaaagc 7053210  T
Q  101 aaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagtctgcaattacaaggaaaggtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7053211 aaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatggtacaagttcaagtttttgttgcagtctgcaattacaaggaaaggtt 7053310  T
Q  201 catcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgatgacatttggcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7053311 catcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgatgacatttggcc 7053410  T
Q  301 tttg 304  Q
    ||||    
T  7053411 tttg 7053414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 38939205 - 38939501
Alignment:
Q  2 aaaatcctacacttcatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagca 101  Q
    ||||||||||||| |||||||||||||||||| |||||||||| |||| |||   || | ||||| ||||        ||||||||||||||||||||||    
T  38939205 aaaatcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttggaatcaatgcaaaaaaaagttcaagaagttttgcaaagca 38939304  T
Q  102 aaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagtctgcaattacaaggaaaggttc 201  Q
    ||||||||||||||||| | |||||||| |||||  |||| || |  |||||||| ||||| |||  ||| ||| ||  || || ||||| ||||||  |    
T  38939305 aaaggtatttacttgtactggatgatgtgtggaaccaagaacaagtaaaatgggaaaagttgaagcattttttgaagagtggaaatacaacgaaaggggc 38939404  T
Q  202 atcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgatgacatttgg 298  Q
    ||| ||||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||   ||| | ||| |||||||||| |||||| |||||||||    
T  38939405 atctattttagtcacaacacgacttgagattgttgcatccatcatgggaactcaccctgctcaccatttggtaggtttatatgatgacgacatttgg 38939501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 304
Target Start/End: Complemental strand, 13378406 - 13378104
Alignment:
Q  2 aaaatcctacacttcatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagca 101  Q
    ||||||||||| |  |||||||||||||  ||||||| |||||| ||||||   ||| | ||||| ||||        ||||||||||||||||||||||    
T  13378406 aaaatcctacattctatcatagaatctgaaacaggacgaaatccgaatctcatgtctttggaatcaatgcaaaaaaaagttcaagaagttttgcaaagca 13378307  T
Q  102 aaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagtctgcaattacaaggaaaggttc 201  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| | ||  |||||||||||||| ||    
T  13378306 aaaggtatttacttgtactagatgatgtgtggaatgaagaccatgttaaatgggaaaagttcaagtttttgttgcaatgtggcattacaaggaaaggatc 13378207  T
Q  202 atcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgatgacatttggcct 301  Q
    ||||||||||||||||||  ||||||| ||||||||||| |||||||||||||| ||   ||||| ||| ||||| |||  |||||| ||||||||| ||    
T  13378206 atcaattttagtcactacgcgacttgagattgttgcatccatcatgggaactcaccctgctcatcatttggtaggattacatgatgaagacatttggtct 13378107  T
Q  302 ttg 304  Q
    |||    
T  13378106 ttg 13378104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 9459 - 9163
Alignment:
Q  2 aaaatcctacacttcatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagca 101  Q
    ||||||||||||| |||||||||||||||||| ||||||| || |||| |||   || | ||||| ||||        ||||||||||||||||||||||    
T  9459 aaaatcctacactccatcatagaatctgccactggacaaagtcataatttcttgactttggaatcgatgcaaaaaaaagttcaagaagttttgcaaagca 9360  T
Q  102 aaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagtctgcaattacaaggaaaggttc 201  Q
    ||| ||||||||||||| | |||||||| |||||  |||| || |  |||||||| ||||| |||  ||  ||| ||  || || ||||| ||||||| |    
T  9359 aaaagtatttacttgtactcgatgatgtgtggaaccaagaacaagtaaaatgggaaaagttgaagcattatttgaagagtggaaatacaacgaaaggtgc 9260  T
Q  202 atcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgatgacatttgg 298  Q
    ||| ||||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||   ||| | ||| |||||||||| |||||| |||||||||    
T  9259 atctattttagtcacaacacgacttgatattgttgcatccatcatgggaactcaccctgctcaccatttggtaggtttatatgatgacgacatttgg 9163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 16781414 - 16781118
Alignment:
Q  2 aaaatcctacacttcatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcnnnnnnnggttcaagaagttttgcaaagca 101  Q
    |||||||||||||  ||||||||||||||||| |||||||||| |||||||||  || ||||||  ||||        ||||||||||||||||||||||    
T  16781414 aaaatcctacactctatcatagaatctgccactggacaaaatcataatctctcgactttagaattaatgcaaaaaaaagttcaagaagttttgcaaagca 16781315  T
Q  102 aaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagtctgcaattacaaggaaaggttc 201  Q
    ||| ||||||||||||| | |||||||| |||||  | || ||    |||||||| ||||| |||  ||  ||| ||  || || ||||| |||||||||    
T  16781314 aaaagtatttacttgtactggatgatgtgtggaaccatgaacaaataaaatgggaaaagttgaagcattatttgaagagtggaaatacaatgaaaggttc 16781215  T
Q  202 atcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgatgacatttgg 298  Q
    ||| ||||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||   ||| | ||| |||||||||| ||| || |||||||||    
T  16781214 atctattttagtcacaacacgacttgatattgttgcatccatcatgggaactcaccctgctcaccatttggtaggtttatatgacgacgacatttgg 16781118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 16658241 - 16658073
Alignment:
Q  79 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcag 178  Q
    |||||||||  ||||||||| |||||||||||| |||||  | ||||||||||||| ||||||||| |  |||||| | ||||| |||| |||||||||     
T  16658241 ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgca- 16658143  T
Q  179 tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaact 253  Q
         | ||  || ||||||| |||||||||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  16658142 -----acttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact 16658073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 16867932 - 16868100
Alignment:
Q  79 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcag 178  Q
    |||||||||| ||||||||| ||||| |||||| |||||  | ||||||||||||| ||||||||| |  |||||| | ||||| |||| |||||||||     
T  16867932 ggttcaagaaattttgcaaaacaaaaagtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgca- 16868030  T
Q  179 tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaact 253  Q
         | ||  || ||||||| |||||||||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  16868031 -----acttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact 16868100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 255
Target Start/End: Complemental strand, 17069738 - 17069568
Alignment:
Q  79 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcag 178  Q
    |||||||||| |||||||||||||||||||||| |||||  | |||||||| |||| ||| ||||| |  |||||| | |  ||||||| |||||| |      
T  17069738 ggttcaagaaattttgcaaagcaaaaggtatttgcttgttcttgatgatgtgtggagtgatgaccaagtgaaatggaatagcttcaagtctttgttac-- 17069641  T
Q  179 tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactca 255  Q
        ||| |  || ||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  17069640 ----caaatggaaagaaaggtgcatcaattttagtcactaccagacttgacattgttgcatccatcatgggaactca 17069568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 16837909 - 16837741
Alignment:
Q  79 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcag 178  Q
    |||||||||| ||||||||| |||||||||||| |||||  | |||||||| |||| ||| ||||| |  |||||| | | |||||||| ||||||||      
T  16837909 ggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgtgtggagtgatgaccaagtgaaatggaatacgttcaagtctttgttgc-- 16837812  T
Q  179 tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaact 253  Q
        ||| |  || ||||||| |||||||||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  16837811 ----caaatggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact 16837741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 16788198 - 16788031
Alignment:
Q  79 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcag 178  Q
    |||||||||| |||| |||| |||||||||| |||||||  | |||||||| |||||||||||||| |  |||||| | |||||||||| |||||||||     
T  16788198 ggttcaagaaatttt-caaaacaaaaggtatctacttgttcttgatgatgtgtggaatgaagaccaagagaaatggaataagttcaagtctttgttgcaa 16788100  T
Q  179 tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaact 253  Q
    | ||       || ||||||| |||||||||| |||||| || ||||||| ||||||||||| ||||||| ||||    
T  16788099 tatg------aaacgaaaggtgcatcaattttggtcactgcacgacttgacattgttgcatccatcatggcaact 16788031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 290
Target Start/End: Original strand, 18806120 - 18806330
Alignment:
Q  80 gttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagt 179  Q
    |||||| || ||||||||| |||||||||| |||||||  | |||||||| |||||||||||||| |  |||||| |  ||||||||| |||  ||||      
T  18806120 gttcaaaaaattttgcaaaacaaaaggtatctacttgttcttgatgatgtgtggaatgaagaccaagagaaatggaatcagttcaagtattttctgcaac 18806219  T
Q  180 ctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggttt 279  Q
     || || |   | ||||||| |||||||||| ||||| || |||||||| ||||||||||| |||||||||||| | ||   ||||| |||  |||| ||    
T  18806220 gtggaaatggcacgaaaggtgcatcaattttggtcacaaccagacttgacattgttgcatcaatcatgggaacttatcctgctcatcatttgttaggctt 18806319  T
Q  280 atctgatgatg 290  Q
    |||||||||||    
T  18806320 atctgatgatg 18806330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 16797398 - 16797230
Alignment:
Q  79 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcag 178  Q
    |||||||||| ||||||||| | |||||||||| |||||  | |||||||| |||| ||| ||||| |  |||||| | | ||||||||  |||||||      
T  16797398 ggttcaagaaattttgcaaaaccaaaggtatttgcttgttcttgatgatgtgtggagtgatgaccaagtgaaatggaatacgttcaagtcattgttgc-- 16797301  T
Q  179 tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaact 253  Q
        ||| |  || ||||||| |||||||||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  16797300 ----caaatggaaagaaaggtgcatcaattttggtcactaccagacttgacattgttgcatccatcatgggaact 16797230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 304
Target Start/End: Complemental strand, 16987685 - 16987467
Alignment:
Q  80 gttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagt 179  Q
    ||||||||| || | |||| ||||||||||||||||||  | |||||||| |||| ||||||||  |  |||||| | |||||||||| | |||||||      
T  16987685 gttcaagaaattctacaaaacaaaaggtatttacttgttcttgatgatgtgtggactgaagaccgagagaaatggaataagttcaagtctgtgttgca-- 16987588  T
Q  180 ctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggttt 279  Q
        || || || ||||||| ||||| |||| ||||| || |||||||| | ||||||||| |||||||||||| | ||   ||||| ||| || || ||    
T  16987587 ----aaatagaacgaaaggtgcatcagttttggtcaccaccagacttgacaatgttgcatccatcatgggaacttatcctgctcatcctttggtcggctt 16987492  T
Q  280 atctgatgatgacatttggcctttg 304  Q
    |||||||||| |||| ||| |||||    
T  16987491 atctgatgatcacatctggtctttg 16987467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 290
Target Start/End: Original strand, 18873124 - 18873324
Alignment:
Q  90 ttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagtctgcaattac 189  Q
    ||||||||| |||||||||| |||||||  | |||||||| |||||||||||||| |  |||||| |  ||||||||| |||  ||||   || || |      
T  18873124 ttttgcaaaacaaaaggtatctacttgttcttgatgatgtgtggaatgaagaccaagagaaatggaatcagttcaagtattttctgcaacgtggaaatgg 18873223  T
Q  190 aaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgat 289  Q
     | ||||||| ||||| |||| ||||| || |||||||| ||||||||||| |||||||||||| | ||   ||||| |||  |||| ||||||||||||    
T  18873224 cacgaaaggtgcatcagttttggtcacaaccagacttgacattgttgcatcaatcatgggaacttatcctgctcatcatttgttaggcttatctgatgat 18873323  T
Q  290 g 290  Q
    |    
T  18873324 g 18873324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 16844054 - 16843967
Alignment:
Q  90 ttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgca 177  Q
    ||||||||| ||||||||||||||||||  | || ||||||||||||||||||||   ||||||||| ||||||| || ||| |||||    
T  16844054 ttttgcaaaacaaaaggtatttacttgtccttgacgatgtttggaatgaagaccaacataaatgggataagttcatgtcttttttgca 16843967  T

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Target: scaffold0133 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 13081 - 12913
Alignment:
Q  79 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcag 178  Q
    |||||||||| ||||||||| |||||||||||| |||||  | |||||||| |||| ||||||||| |  |||||| | |||||||||| || ||||||     
T  13081 ggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgtgtggagtgaagaccaagagaaatggaataagttcaagtcttcgttgcaa 12982  T
Q  179 tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaact 253  Q
      || ||       ||||||| |||||||||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  12981 catggaaa------gaaaggtgcatcaattttggtcactaccagacttgacattgttgcatccatcatgggaact 12913  T

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Target: scaffold0133; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 8739 - 8571
Alignment:
Q  79 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcag 178  Q
    |||||||||| |||||||||  || ||||||||||||||  | |||||||| |||| ||||||| | |  |||||| | ||||| |||| ||||||||      
T  8739 ggttcaagaaattttgcaaaaaaataggtatttacttgttcttgatgatgtgtggactgaagacaaagagaaatggaataagttaaagtctttgttgct- 8641  T
Q  179 tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaact 253  Q
         || |  || ||||||| ||||||||||  ||||||| |||||||| ||||||||||| ||||||||||||    
T  8640 -----aaatggaaagaaaggtgcatcaattttgatcactaccagacttgacattgttgcatccatcatgggaact 8571  T

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Target: scaffold0133; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 27001 - 26946
Alignment:
Q  80 gttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaa 135  Q
    ||||||||||||||||||||||||| ||||||||||||| | |||| ||| |||||    
T  27001 gttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgctgtgtggaa 26946  T

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Target: scaffold0133; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 18175 - 18074
Alignment:
Q  197 ggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgatgacattt 296  Q
    |||| ||| ||||||||||| ||| ||||||| ||||||||||| |||| | || |||| ||   ||| | ||| |||||||||| ||||||||||||||    
T  18175 ggtttatctattttagtcacaacacgacttgagattgttgcatccatcacgtgatctcaccctgctcaccatttggtaggtttatatgatgatgacattt 18076  T
Q  297 gg 298  Q
    ||    
T  18075 gg 18074  T

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Target: scaffold0144 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 37719 - 37551
Alignment:
Q  79 ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcag 178  Q
    |||||||||  ||||||||| |||||||||||| |||||  | ||||||||||||| ||||||||| |  |||||| | ||||| |||| |||||||||     
T  37719 ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgca- 37621  T
Q  179 tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaact 253  Q
         | ||  || ||||||| ||||||| || |||||||| |||||| | ||||||||||| ||||||||||||    
T  37620 -----acttggaaagaaaggtgcatcaatattggtcactaccagacttcagattgttgcatccatcatgggaact 37551  T

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Target: scaffold0230 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 290
Target Start/End: Complemental strand, 4900 - 4700
Alignment:
Q  90 ttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatgggacaagttcaagtttttgttgcagtctgcaattac 189  Q
    ||||||||| |||||| ||| |||||||  | |||||||| |||||||||||||| |  |||||| |  ||||||||| |||  ||||   || || |      
T  4900 ttttgcaaaacaaaagatatctacttgttcttgatgatgtgtggaatgaagaccaagagaaatggaatcagttcaagtattttctgcaacgtggaaatgg 4801  T
Q  190 aaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgat 289  Q
     | ||||||| ||||| |||| ||||| || |||||||| ||||||||||| |||||||||||| | ||   ||||| |||  |||| ||||||||||||    
T  4800 cacgaaaggtgcatcagttttggtcacaaccagacttgacattgttgcatcaatcatgggaacttatcctgctcatcatttgttaggcttatctgatgat 4701  T
Q  290 g 290  Q
    |    
T  4700 g 4700  T

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Target: scaffold0511 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 9477 - 9380
Alignment:
Q  193 gaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgatg 290  Q
    ||||||| ||||| |||| ||||| || |||||||| ||||||||||| |||||||||||| | ||   ||||| |||  |||| |||||||||||||    
T  9477 gaaaggtgcatcagttttggtcacaaccagacttgacattgttgcatcaatcatgggaacttatcctgctcatcatttgttaggcttatctgatgatg 9380  T

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