View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_high_57 (Length: 306)
Name: NF1863_high_57
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_57 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 43902735 - 43902459
Alignment:
| Q |
8 |
gttgtgaatcatctcggactgcataagtaattagatatagggaatgctttgaggtggactnnnnnnngaaattggggagaaattaattaactatttgagg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
43902735 |
gttgtgaatcatctcggactgcataagtaactagatatagggaatgctttgaggtggactaaaaaaagaaattggggagaaa--agttaactatttgagg |
43902638 |
T |
|
| Q |
108 |
caggttaagttcatgtgcatcaaattaaaagggattgtggtacgtactgctagaggcaaccctgaaagccatgtgcttcacccactttaggtactctttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43902637 |
caggttaagttcatgtgcatcaaattaaaagggattgtggtac----tgctagaggcaaccctgaaagccatgtgcttcacccactttaggtactctttt |
43902542 |
T |
|
| Q |
208 |
aattatttaattgatgatatataggttcaccagttcctcatgattcaataaaacaaattactcctaaaaaatgaatgacaaaa |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43902541 |
aattatttaattgatgatatataggttcaccagttcctcatgattcaataaaacaaattactcctaaaaaatgaatgacaaaa |
43902459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University