View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_high_59 (Length: 303)
Name: NF1863_high_59
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_59 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 2384088 - 2383812
Alignment:
| Q |
1 |
aacatgaaattcggagtgaggcaaaatttggtagatgnnnnnnnngagtcaaataagttatggagttagctcaaatttgtttaaaggttaaaagccatcc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2384088 |
aacatgaacttcggagtgaggcaaaatttggtagatgaaaaaaa-gagtcaaataagttatggagttggctcaaatttgtttaaaggttaaaagc----- |
2383995 |
T |
|
| Q |
101 |
ccctcttttcatccaaaacttctatcacatgtttctaagtaaatctttttcaattgaataaccaaaagacaaagtcaactgaaccattgtgttagctcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2383994 |
---tcttttcatccaaaacttctatcacatgtttctaagtaaatctttttcaattgaataaccaaaaaacaaagtcaactgaaccattgtgttagctcaa |
2383898 |
T |
|
| Q |
201 |
ctttgatgtaaattttgaagagcttttgctttagattcatcaagtccctatctaactatgattgacataaaaaactataaaaattc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2383897 |
ctttgatgtaaattttgaagagcttttgctttagattcatcaagtccctatctaactatgattgacataaaaaactataaaaattc |
2383812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University