View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_high_60 (Length: 298)

Name: NF1863_high_60
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_high_60
NF1863_high_60
[»] chr7 (1 HSPs)
chr7 (140-282)||(6557060-6557201)
[»] chr8 (3 HSPs)
chr8 (241-275)||(29367259-29367293)
chr8 (240-280)||(1370490-1370530)
chr8 (241-273)||(38896367-38896399)
[»] chr3 (3 HSPs)
chr3 (241-280)||(15312052-15312091)
chr3 (241-279)||(47844308-47844346)
chr3 (242-275)||(16983926-16983959)
[»] chr5 (3 HSPs)
chr5 (241-275)||(4638760-4638794)
chr5 (241-273)||(28350402-28350434)
chr5 (241-273)||(33019069-33019101)
[»] chr2 (2 HSPs)
chr2 (241-275)||(20240121-20240155)
chr2 (241-275)||(37532915-37532949)
[»] scaffold0045 (2 HSPs)
scaffold0045 (241-274)||(61317-61350)
scaffold0045 (241-274)||(68649-68682)
[»] chr6 (1 HSPs)
chr6 (241-274)||(7286330-7286363)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 140 - 282
Target Start/End: Complemental strand, 6557201 - 6557060
Alignment:
Q  140 ggattatattaatgtacttagtttgttaacgtctgcctaaaggactgtagagttttctttgtaacttttgtagaagatttatactcaaaatgtgactacc 239  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6557201 ggattatattaatgtacatagtttgttaacatctgcctaaaggactgtagagttttctttgtaacttttgtagaagatttatactcaaaatatgactacc 6557102  T
Q  240 attttttaacaagtaaaaatgaattatattaacactaacaaaa 282  Q
      ||||||||||||||||||||||| |||||||||||||||||    
T  6557101 -ctttttaacaagtaaaaatgaattgtattaacactaacaaaa 6557060  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 29367293 - 29367259
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaacact 275  Q
    |||||||||||||||||||||||||||||||||||    
T  29367293 ttttttaacaagtaaaaatgaattatattaacact 29367259  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 1370490 - 1370530
Alignment:
Q  240 attttttaacaagtaaaaatgaattatattaacactaacaa 280  Q
    |||||||||||||||||| |||| |||||||| ||||||||    
T  1370490 attttttaacaagtaaaattgaaatatattaagactaacaa 1370530  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 38896399 - 38896367
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaaca 273  Q
    ||||||||||||| |||||||||||||||||||    
T  38896399 ttttttaacaagtcaaaatgaattatattaaca 38896367  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 15312052 - 15312091
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaacactaacaa 280  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  15312052 tttttgaacaagcaaaaatgaattatattaacactaacaa 15312091  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 47844346 - 47844308
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaacactaaca 279  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  47844346 ttttttaacaagctaaaatgaattatattaacactaaca 47844308  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 16983926 - 16983959
Alignment:
Q  242 tttttaacaagtaaaaatgaattatattaacact 275  Q
    |||||||||||| |||||||||||||||||||||    
T  16983926 tttttaacaagtcaaaatgaattatattaacact 16983959  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 4638760 - 4638794
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaacact 275  Q
    |||||||||||||||||||| ||||||||||||||    
T  4638760 ttttttaacaagtaaaaatggattatattaacact 4638794  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 28350434 - 28350402
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaaca 273  Q
    |||||||| ||||||||||||||||||||||||    
T  28350434 ttttttaagaagtaaaaatgaattatattaaca 28350402  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 33019101 - 33019069
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaaca 273  Q
    |||||||||||||||||||| ||||||||||||    
T  33019101 ttttttaacaagtaaaaatggattatattaaca 33019069  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 20240155 - 20240121
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaacact 275  Q
    |||||||||||| ||||||||||||||||||||||    
T  20240155 ttttttaacaagcaaaaatgaattatattaacact 20240121  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 37532949 - 37532915
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaacact 275  Q
    |||||||||||| ||||||||||||||||||||||    
T  37532949 ttttttaacaagcaaaaatgaattatattaacact 37532915  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 61350 - 61317
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaacac 274  Q
    |||||||||||| |||||||||||||||||||||    
T  61350 ttttttaacaaggaaaaatgaattatattaacac 61317  T

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Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 68682 - 68649
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaacac 274  Q
    |||||||||||| |||||||||||||||||||||    
T  68682 ttttttaacaaggaaaaatgaattatattaacac 68649  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 7286330 - 7286363
Alignment:
Q  241 ttttttaacaagtaaaaatgaattatattaacac 274  Q
    |||||||||||||||||||||| |||||||||||    
T  7286330 ttttttaacaagtaaaaatgaaatatattaacac 7286363  T

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