View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_65 (Length: 288)
Name: NF1863_high_65
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_65 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 18103369 - 18103642
Alignment:
| Q |
1 |
tgaacacatatttggttttgcttggttttgtcaaattaacatctaggccattgtctcagttacatcaaggacacctgtaaagttttattttttgagagcc |
100 |
Q |
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| T |
18103369 |
tgaacacatatttggttttgcttggttttgtcaaattaacatctaggccattgtctcagttacatcaaggacacccgtaaagttttattttttgagagcc |
18103468 |
T |
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| Q |
101 |
aacgtttgtcctaatcgttagagtttcaaacgactttaagtattgatctaaggtagaccacctttcaacatgtccatagttgaacttgcatatatttaaa |
200 |
Q |
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| T |
18103469 |
aacgtttgtcctaatcgttagagtttcaaacgactttaaatattgatctaaggtagaccacctttcaacatgtccatagttgaacttgcatatatttaaa |
18103568 |
T |
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| Q |
201 |
tattaataatgaggtagagtgttacaatttcaaagacttactaaataattttggtatgtataccagaacatatt |
274 |
Q |
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| T |
18103569 |
tattaataatgaggtagagtgttacaatttcaaagacttactaaataattttggtatgtataccagaacatatt |
18103642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 18093599 - 18093634
Alignment:
| Q |
239 |
tactaaataattttggtatgtataccagaacatatt |
274 |
Q |
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| T |
18093599 |
tactaaataattttggtatgtataccagaacatatt |
18093634 |
T |
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