View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_70 (Length: 276)
Name: NF1863_high_70
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 50140801 - 50140546
Alignment:
| Q |
14 |
acattgttgagtattaacactgctattatgaataatgttattgttttcatatttgatctcagatcaatgcaacaaattacagatgaagataaaagttgca |
113 |
Q |
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| T |
50140801 |
acattgttgagtattaacactgctattatgaacaatgttattgttttcatatttgatctctgatcaatgcaacaaattacagatgaagataaaagttgca |
50140702 |
T |
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| Q |
114 |
agatgagagtgttgtaaggaaaagtgtagagtttgaagtgttgagaaaagaagaggaaagtggggtgaatgagtgcagaaggagaaaggttgggaagtga |
213 |
Q |
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| T |
50140701 |
agatgagagtgttgtaaggaaaagtgtagagtttgaagtgttgagaaaagaagaggaaagtggggtgaatgagtgcagaaggagaaaggttgggaagtga |
50140602 |
T |
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| Q |
214 |
ccaggactcttacttgaaaagcaacactcatgtacctttttgttgatgcacctttg |
269 |
Q |
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| T |
50140601 |
ctaggactcttacttgaaaagcaatactcatgtacctttttgttgatgcacctttg |
50140546 |
T |
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