View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_high_80 (Length: 251)
Name: NF1863_high_80
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_80 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 24543890 - 24543643
Alignment:
| Q |
4 |
ggaggagcagagatagtagttaggggcaaagcagataaacatgtctcgtggaatatatgactgcatggaagaatagcaacttcagataaaacagtactac |
103 |
Q |
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| T |
24543890 |
ggaggatcagtgatagtagttaggggcaaagcagataaacatgtctcgtggaatatatgactgcatggaagaatagcaacttcagataaaacagtactac |
24543791 |
T |
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| Q |
104 |
tcaaatcttctcttccttgggaagagaataaataatgttgtagctcatcttctccatcttgaattgaatcttcctctgcctctttatcttctaaatcttt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
24543790 |
tcaaatcttctcttccttgggaagagaataaataatgttgtagctcatcttctccatcttgaattgaatcttcctcttcctcttcctcttctaaatcttt |
24543691 |
T |
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| Q |
204 |
cccacacaacacacaagtataacatgtacttgtttcatcaatgcctgt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24543690 |
cccacacaacacacaagtataacatgtacttgtttcatcaatgcctgt |
24543643 |
T |
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