View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_high_83 (Length: 249)
Name: NF1863_high_83
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_83 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3433311 - 3433072
Alignment:
| Q |
1 |
actccgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3433311 |
actccgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccaca |
3433212 |
T |
|
| Q |
101 |
aaccttactataatgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3433211 |
aaccttactataatgtatagacaggttgtgtctggtggaaaaacctcaacacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtg |
3433112 |
T |
|
| Q |
201 |
ctggatccgtagagattgttccacataatatagttcatct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3433111 |
ctggatccgtagagattgttccacataatatagttcatct |
3433072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3427120 - 3426904
Alignment:
| Q |
1 |
actccgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
3427120 |
actccgaaatgcaaatcatcaacctccaacactcatagacttaaactatga------cggtga---cgatgaaaatgatgaaaatgaaagaatctccaca |
3427030 |
T |
|
| Q |
101 |
aaccttactataatgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||| |||| || |||||||||| | |||||||||| || ||| ||| ||||| |||| |
|
|
| T |
3427029 |
aaccttactataatgtatagacaacttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccgtgccggtgatcaacccgatccaggtg |
3426930 |
T |
|
| Q |
201 |
ctggatccgtagagattgttccacat |
226 |
Q |
| |
|
|||||||| |||||| |||||||||| |
|
|
| T |
3426929 |
ctggatccatagagaatgttccacat |
3426904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11897156 - 11897390
Alignment:
| Q |
1 |
actccgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccaca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||| | |||||||| || ||||||| | | ||| |||| |
|
|
| T |
11897156 |
actccgaaatgcaaaacatcaacctccaacactcatagacttcaactatggtcactgcgatgacatcgatgaagatggtgaaaataacataatccacaca |
11897255 |
T |
|
| Q |
101 |
aaccttactataatgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||| || |||| | ||| |
|
|
| T |
11897256 |
aaccttactataatgtatagacaggttgtgtctagaggaaaaaactcaagacttttcctcggatacccttaccgtgctggaggtgtaccgaa---atgtg |
11897352 |
T |
|
| Q |
201 |
ctggatccgtagagattgttccacataatatagttcat |
238 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
11897353 |
ctggatccgtagagattgttcctcataatacagttcat |
11897390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University