View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_high_85 (Length: 248)

Name: NF1863_high_85
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_high_85
NF1863_high_85
[»] chr1 (3 HSPs)
chr1 (9-181)||(46910480-46910652)
chr1 (139-180)||(42843262-42843303)
chr1 (144-181)||(50777346-50777383)
[»] chr8 (1 HSPs)
chr8 (141-180)||(2597080-2597119)
[»] chr7 (4 HSPs)
chr7 (139-178)||(42942297-42942336)
chr7 (141-178)||(8742497-8742534)
chr7 (144-180)||(25614744-25614780)
chr7 (120-180)||(38990213-38990273)
[»] chr6 (2 HSPs)
chr6 (141-180)||(1803981-1804020)
chr6 (144-181)||(6435147-6435184)
[»] chr3 (2 HSPs)
chr3 (141-180)||(54233421-54233460)
chr3 (141-181)||(35756091-35756131)
[»] chr2 (5 HSPs)
chr2 (141-180)||(36582368-36582407)
chr2 (141-180)||(38572051-38572090)
chr2 (139-178)||(42141528-42141567)
chr2 (139-180)||(12192059-12192100)
chr2 (141-181)||(33030022-33030062)
[»] chr4 (1 HSPs)
chr4 (141-179)||(15638243-15638281)
[»] chr5 (1 HSPs)
chr5 (139-180)||(10522887-10522928)
[»] scaffold0049 (1 HSPs)
scaffold0049 (141-181)||(72091-72131)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 46910652 - 46910480
Alignment:
Q  9 ttatactacacatatgaagacaaaaggnnnnnnnttcttcattattaatccttcctaataaacaatactccttttattctttcttaatcgttatctctca 108  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||     
T  46910652 ttatactacacatatgaagacaaaaggaaaaaaattcttcattattaatccttcctaataaacaatactccatttattctttattaatcgttatctctcg 46910553  T
Q  109 ttataccatcttgagcaatgatatttgcacataactttggtgacaaccgtgtttttctctattcttattggtt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  46910552 ttataccatcttgagcaatgatatttgcacataactttggtgacaaccgtggttttttctattcttattggtt 46910480  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 42843262 - 42843303
Alignment:
Q  139 ataactttggtgacaaccgtgtttttctctattcttattggt 180  Q
    |||| ||||||||||||| ||||||||||| |||||||||||    
T  42843262 ataattttggtgacaaccttgtttttctctcttcttattggt 42843303  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 50777346 - 50777383
Alignment:
Q  144 tttggtgacaaccgtgtttttctctattcttattggtt 181  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  50777346 tttggtgacaaccttgtttttctctcttcttattggtt 50777383  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 2597080 - 2597119
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattggt 180  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  2597080 aactttggtgacaaccttgtttttctctcttcttattggt 2597119  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 42942297 - 42942336
Alignment:
Q  139 ataactttggtgacaaccgtgtttttctctattcttattg 178  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  42942297 ataattttggtgacaaccttgtttttctctattcttattg 42942336  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 8742534 - 8742497
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattg 178  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  8742534 aactttggtgacaaccttgtttttctctcttcttattg 8742497  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 25614744 - 25614780
Alignment:
Q  144 tttggtgacaaccgtgtttttctctattcttattggt 180  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  25614744 tttggtgacaaccttgtttttctctcttcttattggt 25614780  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 38990273 - 38990213
Alignment:
Q  120 tgagcaatgatatttgcacataactttggtgacaaccgtgtttttctctattcttattggt 180  Q
    |||| ||||||||||| ||||   |||| |||||||| |||||||||||||| ||||||||    
T  38990273 tgaggaatgatatttggacatccatttgatgacaaccttgtttttctctatttttattggt 38990213  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 1804020 - 1803981
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattggt 180  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  1804020 aactttggtgacaaccttgtttttctctcttcttattggt 1803981  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 6435184 - 6435147
Alignment:
Q  144 tttggtgacaaccgtgtttttctctattcttattggtt 181  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  6435184 tttggtgacaaccttgtttttctctcttcttattggtt 6435147  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 54233421 - 54233460
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattggt 180  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  54233421 aactttggtgacaaccttgtttttctctcttcttattggt 54233460  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 35756131 - 35756091
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattggtt 181  Q
    |||||||||||||||  ||||||||||| ||||||||||||    
T  35756131 aactttggtgacaactttgtttttctctcttcttattggtt 35756091  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 36582407 - 36582368
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattggt 180  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  36582407 aactttggtgacaaccttgtttttctctattctaattggt 36582368  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 38572090 - 38572051
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattggt 180  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  38572090 aactttggtgacaaccttgtttttctctcttcttattggt 38572051  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 42141528 - 42141567
Alignment:
Q  139 ataactttggtgacaaccgtgtttttctctattcttattg 178  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  42141528 ataactttgttgacaaccttgtttttctctattcttattg 42141567  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 12192100 - 12192059
Alignment:
Q  139 ataactttggtgacaaccgtgtttttctctattcttattggt 180  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  12192100 ataactttggtgacaaccttgcttttctctatttttattggt 12192059  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 33030022 - 33030062
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattggtt 181  Q
    ||||||| |||||||| |||||||||||||| |||||||||    
T  33030022 aactttgatgacaaccttgtttttctctatttttattggtt 33030062  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 15638281 - 15638243
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattgg 179  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  15638281 aactttggtgacaaccttgtttttctctcttcttattgg 15638243  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 10522928 - 10522887
Alignment:
Q  139 ataactttggtgacaaccgtgtttttctctattcttattggt 180  Q
    |||||||| ||||||||| ||||||||||| |||||||||||    
T  10522928 ataactttagtgacaaccttgtttttctctcttcttattggt 10522887  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 72091 - 72131
Alignment:
Q  141 aactttggtgacaaccgtgtttttctctattcttattggtt 181  Q
    |||||||||||||||| || ||||||| |||||||||||||    
T  72091 aactttggtgacaaccttggttttctcaattcttattggtt 72131  T

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