View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_high_89 (Length: 244)
Name: NF1863_high_89
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_89 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13751079 - 13751308
Alignment:
| Q |
1 |
caaagcatgaacttgtaattttaaaatatatgaaaaagagaatgaagatcttattataataagctaataatgaaccttgaaggttttgctccatccattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13751079 |
caaagcatgaacttgtaattttaaaatatatgaaaaagagaatgaagatcttattattataagctaataatgaaccttgaaggttttgctccatccattt |
13751178 |
T |
|
| Q |
101 |
tgattgctttgttctgacgtgactagcccaccaccatgaatatgcattgctagctgctctctgcaacannnnnnnnctttgtaatgtttgtttggttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13751179 |
tgattgctttgttctgacgtgactagcccaccaccatgaatatgcattgctagctgctctctgcaaca-tttttttctttgtaatgtttgtttggttttc |
13751277 |
T |
|
| Q |
201 |
cctttgtccttgatgatattgagatcttatt |
231 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |
|
|
| T |
13751278 |
ccttggtccttgatgatattaagatcttatt |
13751308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 27973578 - 27973511
Alignment:
| Q |
90 |
tccatccattttgattgctttgttctgacgtgactagcccaccaccatgaatatgcattgctagctgc |
157 |
Q |
| |
|
|||| |||||||||||||||||| || | ||| || ||||||||||||||||||||||| || ||||| |
|
|
| T |
27973578 |
tccaaccattttgattgctttgtcctaatgtggctggcccaccaccatgaatatgcattacttgctgc |
27973511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 28754571 - 28754666
Alignment:
| Q |
73 |
aaccttgaaggttttgctccatccattttgattgctttgttctgacgtgactagcccaccaccatgaatatgcattgctagctgctctctgcaaca |
168 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||| | ||| || ||||||||||||||||| |||||||| || ||||| ||||||| |
|
|
| T |
28754571 |
aaccttggaggttttgttccatccattttgattgctttgttctaatgtggctggcccaccaccatgaataagcattgcttgcagctctttgcaaca |
28754666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 46044977 - 46045052
Alignment:
| Q |
85 |
tttgctccatccattttgattgctttgttctgacgtgactagcccaccaccatgaatatgcattgctagctgctct |
160 |
Q |
| |
|
|||| |||| |||||||||||| ||||| |||| ||| ||| ||||||||||||||||||||||| | |||||||| |
|
|
| T |
46044977 |
tttgttccagccattttgattgttttgtcctgatgtggctaacccaccaccatgaatatgcattggttgctgctct |
46045052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University