View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_high_90 (Length: 244)
Name: NF1863_high_90
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_high_90 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35172263 - 35172500
Alignment:
| Q |
1 |
aaactccaaatttgtgaggcagagccaaaatgtcgcttctccctggatctccgtatgcactccaaagccatcttcagaaagtagtactaagcaatcaggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35172263 |
aaactccaaatttgtgaggcagagccaaaatgtcgcttctcccaggatctccgtatgcactccaaagccatcttcagaaagtagtactaagcaatcaggc |
35172362 |
T |
|
| Q |
101 |
ttgttttgggtgaaaagtagtgaaagtttggcaaaaagatcattttcaaggagccaaccgaggattcatgctggagatagtgtggatatgtgtaaaagtt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35172363 |
ttgtttttggtgaaaagtagtgaaagtttggaaaaaagatcattttcaaggagccaaccgaggattcatgctggagatagtgtggatatgtgtaaaagtt |
35172462 |
T |
|
| Q |
201 |
acaaggtcaagactgccccaaaagtcagagagaataat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35172463 |
acaaggtcaagactgccccaaaagtcagagaggataat |
35172500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University