View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_high_94 (Length: 238)

Name: NF1863_high_94
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_high_94
NF1863_high_94
[»] chr4 (8 HSPs)
chr4 (113-238)||(25160115-25160240)
chr4 (15-57)||(25160296-25160338)
chr4 (113-234)||(25180348-25180469)
chr4 (115-187)||(25189340-25189412)
chr4 (116-189)||(24986311-24986384)
chr4 (116-189)||(25000779-25000852)
chr4 (113-234)||(25168680-25168801)
chr4 (113-216)||(25252465-25252568)
[»] chr3 (1 HSPs)
chr3 (113-237)||(9213705-9213829)
[»] chr2 (3 HSPs)
chr2 (113-185)||(42167210-42167282)
chr2 (113-185)||(42290584-42290656)
chr2 (113-166)||(42156742-42156795)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 25160240 - 25160115
Alignment:
Q  113 caagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggagctacagccaaaatggctatgcga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  25160240 caagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggagctatagccaaaatggctatgcaa 25160141  T
Q  213 atgggcgaatggcaccgggtcgttgc 238  Q
    ||||||||||||||||||||||||||    
T  25160140 atgggcgaatggcaccgggtcgttgc 25160115  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 25160338 - 25160296
Alignment:
Q  15 atccaaaacatagtttattgtcttcataatatatacactgtat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25160338 atccaaaacatagtttattgtcttcataatatatacactgtat 25160296  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 25180469 - 25180348
Alignment:
Q  113 caagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggagctacagccaaaatggctatgcga 212  Q
    |||||||||||||||||||| || ||   |||||| |||||||| ||  ||||| | |||||||| ||||||||||| ||||| |||||||| ||||| |    
T  25180469 caagactatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgagccatggagttacagtcaaaatggatatgcaa 25180370  T
Q  213 atgggcgaatggcaccgggtcg 234  Q
    ||||   ||||||||| |||||    
T  25180369 atggcgcaatggcaccaggtcg 25180348  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 25189412 - 25189340
Alignment:
Q  115 agactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatgg 187  Q
    ||||||||| || ||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||||    
T  25189412 agactatgctgatctttgcttcaaggaatttggagatagagtgaagtactgggttacttttaacgaaccatgg 25189340  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 24986384 - 24986311
Alignment:
Q  116 gactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggag 189  Q
    |||||||| |||||||| | |||||||||||||||||| || ||  ||||| |||||||||| || ||||||||    
T  24986384 gactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatggag 24986311  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 25000779 - 25000852
Alignment:
Q  116 gactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggag 189  Q
    |||||||| |||||||| |||||||||||||| ||||| || ||  ||||| |||||||||| || ||||||||    
T  25000779 gactatgctgaactttgcttcaaggaatttggcgatagggtgaaacattggattactttgaatgaaccatggag 25000852  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 25168801 - 25168680
Alignment:
Q  113 caagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggagctacagccaaaatggctatgcga 212  Q
    |||||||||||||||||||| |||||   |||||| |||||||| ||  ||||| | |||||||| || |||||||  ||||| ||| |||| ||||| |    
T  25168801 caagactatgcggaactttgcttcaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaa 25168702  T
Q  213 atgggcgaatggcaccgggtcg 234  Q
    ||||   ||||||||| |||||    
T  25168701 atggtgaaatggcacctggtcg 25168680  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 25252465 - 25252568
Alignment:
Q  113 caagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggagctacagccaaaatggctatgcga 212  Q
    |||||||||||||||||||| |||||   |||||| |||||||| ||  ||||| | |||||||| || |||||||  ||||| ||| |||| ||||| |    
T  25252465 caagactatgcggaactttgcttcaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaa 25252564  T
Q  213 atgg 216  Q
    ||||    
T  25252565 atgg 25252568  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 9213705 - 9213829
Alignment:
Q  113 caagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggagctacagccaaaatggctatgcga 212  Q
    ||||||||||| |||||||| || ||||| ||||||||||| || || ||||||||||||||||| || |||||||| ||||| |||||||||||||| |    
T  9213705 caagactatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagttacagtcaaaatggctatgcaa 9213804  T
Q  213 atgggcgaatggcaccgggtcgttg 237  Q
    |||| ||||||||||| ||||||||    
T  9213805 atggacgaatggcaccaggtcgttg 9213829  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 42167282 - 42167210
Alignment:
Q  113 caagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccat 185  Q
    |||||||||||||||||||||||||| || ||||| ||||| || ||||||||| ||||||| || |||||||    
T  42167282 caagactatgcggaactttgtttcaaagagtttggagatagggtgaagtattggattactttcaatgagccat 42167210  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 42290584 - 42290656
Alignment:
Q  113 caagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccat 185  Q
    |||||||| ||||||||||||||||| || ||||| ||||| || ||||||||| | ||||| || |||||||    
T  42290584 caagactacgcggaactttgtttcaaagagtttggagatagggtgaagtattggatcactttcaatgagccat 42290656  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 42156795 - 42156742
Alignment:
Q  113 caagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgg 166  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || |||||||||    
T  42156795 caagattatgcggaactttgtttcaaagagtttggagatagggtgaagtattgg 42156742  T

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