View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_10 (Length: 550)
Name: NF1863_low_10
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 32 - 460
Target Start/End: Original strand, 31082812 - 31083238
Alignment:
| Q |
32 |
aaatgatactaaaatgttacagaaatgatacattnnnnnnnn-tgaactagtgaaccaataaaccaatttttaaaataaggggacaaaacttcacnnnnn |
130 |
Q |
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| T |
31082812 |
aaatgatactaaaatgtgatagaaatgatacattaaaaaaaaatgaactagtgaaccaataaaccaaattttaaaataaggggacaaaacttcacttttt |
31082911 |
T |
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| Q |
131 |
nn-aaaataagggaataaaaagtgcatttaaacttgagtttatttagtaaaagtaacaaaggtccctgtagcttaaaccctttgaacctggtatgagagt |
229 |
Q |
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| T |
31082912 |
tttaaaataagggaataaaaagtgcatttaaacttgagtttatttagtaaaagtaacaaagatccctgcagcttaa-ccctttgaacccggtatgagagt |
31083010 |
T |
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| Q |
230 |
gatcatcgaatcgaaaatgcaataactgattttcattgcaaatttttatttaccaaatacattataaagtgtaaatttattaagaaatatgattcacttt |
329 |
Q |
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| T |
31083011 |
gatcatcgaatcgaaaatgcaataactgattttcattgcaaatttttatttaccaaatacattataaagtgtaaatttattaagaaatatgattcacttt |
31083110 |
T |
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| Q |
330 |
tgcttaaaaaataataaatatgattaattttgtaaactagtaatatgtcgtccatcaacaagtttattaannnnnnnaaaatttgcataacnnnnnnnat |
429 |
Q |
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| T |
31083111 |
tgcttaaaaaataataaatatgattaattttgtaaactagtaatat---gtccattaacaagtttattaattttttaaaaatttgcataactttttttat |
31083207 |
T |
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| Q |
430 |
tcagaaaacttaaacaaacattaattctttt |
460 |
Q |
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| T |
31083208 |
tcagaaaacttaaacaaacattaattctttt |
31083238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 445 - 516
Target Start/End: Original strand, 31083253 - 31083324
Alignment:
| Q |
445 |
aaacattaattcttttatcatgttatatgtagcaaatgtttgattaattaactaatctatgtcaaggatatt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31083253 |
aaacattaattcttttatcatgttatatgtagcaaatgtttgattaattaactaatctatgtcaaggatatt |
31083324 |
T |
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