View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_low_101 (Length: 237)
Name: NF1863_low_101
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_101 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 45636090 - 45636304
Alignment:
| Q |
23 |
atttgtttaaaggctccaaattcctagccacacaaatcagtccattagaatattatcctttctttactgcacggaatcaataatattattctttacatta |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45636090 |
atttgtttaaaggctccaaattcctagccacgcaaatcagtgcattagaatattatcctttctttactgcacggaatcaataatattattctttacatta |
45636189 |
T |
|
| Q |
123 |
ccagtaatatgttcattgttaccaaatgtttttaagaaaatcaattgtatcattatctatgttttgactcaactcaaacaatttttcacataattgagtt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45636190 |
ccagtaatatgttcattgttaccaaatgtttttaagaaaatcaattgtatcattatctatgttttgactcaactcaaacaatttttcacataattgagtt |
45636289 |
T |
|
| Q |
223 |
atttttctgtccatt |
237 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45636290 |
atttttctgtccatt |
45636304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University