View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_low_11 (Length: 533)
Name: NF1863_low_11
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_11 |
 | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0144 (3 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 16986796 - 16986317
Alignment:
| Q |
1 |
tactatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16986796 |
tactatcaaaaactcctcttcgagctttacatacaagttctcatcaactatcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttg |
16986697 |
T |
|
| Q |
101 |
tgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaattt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
16986696 |
tgacatcacaactttgcctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgtttttttatctagttttcccaaacaattt |
16986597 |
T |
|
| Q |
201 |
gcagaattgaaggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattga |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
16986596 |
acaaaattgaaggaccttcgacatctcatgattaaagattgcccgtcattgatatcaactccttttagaattagggagttaacttgtttgaaaacattga |
16986497 |
T |
|
| Q |
301 |
ccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | |
|
|
| T |
16986496 |
ccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacatcaaaggccttgagaatgtgtc |
16986397 |
T |
|
| Q |
401 |
taacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggcgatgatg |
480 |
Q |
| |
|
|| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16986396 |
aaataaagaggatgctaaagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggtgatgatg |
16986317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 472
Target Start/End: Original strand, 16868823 - 16869281
Alignment:
| Q |
14 |
tcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaact |
113 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||| ||| ||||| | | |||| |||||||| |
|
|
| T |
16868823 |
tcctctccgagctttagctacaagttcatttcaactctcatcattgaagaatttaatacatttgaggttgttggtactttgcgatagtgatatcacaacc |
16868922 |
T |
|
| Q |
114 |
ttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaagg |
213 |
Q |
| |
|
|| || | ||| |||||| |||||||||||| |||||||| | | ||||| ||| |||| ||||||||||||||| | ||||| ||| |
|
|
| T |
16868923 |
ttgcccgcgtctatttgtaaactgcagaaattgcaaacacttagaattgaatcttgcaattttttctctagttttcccaaacaattcaaaaaattgcagg |
16869022 |
T |
|
| Q |
214 |
accttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagt |
313 |
Q |
| |
|
|||||||||||||||||| | || |||| || ||||||| |||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||| || |
|
|
| T |
16869023 |
accttcgacatctcatgattgaagattgtccatcattgaaatcaactcctttcagaattggagagttaactagtctgcaaacattgaccaatttcatggt |
16869122 |
T |
|
| Q |
314 |
tggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgat |
413 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
16869123 |
tggttcaaaaactgggtttggtttagcagagctacacaagttacaattaggaggcaagctatacatcaaaggtcttgagaatgtgtcgaacgaagatgat |
16869222 |
T |
|
| Q |
414 |
gctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16869223 |
gctagagaagctaatttgattggaaagaaggacttaaatcgcttatatttgtcatgggg |
16869281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 16796492 - 16796029
Alignment:
| Q |
14 |
tcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaact |
113 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||| |||| |||||||||| |||||| ||| ||||||||||| ||||| | ||| | |||||||| |
|
|
| T |
16796492 |
tcctctccgagctttacgtacaagttcttgtcaattctcttcattgaagaatttaatacatgtgaggtacttggaacttaacgaatgttatatcacaacc |
16796393 |
T |
|
| Q |
114 |
ttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaagg |
213 |
Q |
| |
|
|| |||| ||||||||||||||||||||||| |||||||| ||||||||| |||| |||| ||||||||||||||| | ||||| ||| |
|
|
| T |
16796392 |
ttgcctgcgtctgtttgtagactgcagaaattgcaaacacttaaacttgaacattgctattttttctctagttttcccaaacaattcaaaaaattgcagg |
16796293 |
T |
|
| Q |
214 |
accttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagt |
313 |
Q |
| |
|
|||||||||||||||| | |||| |||| || ||||||| |||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
16796292 |
accttcgacatctcataattaaagattgtccatcattgaaatcaactccttttagaattggggagttatctagtctgcaaacattgaccaatttcatagt |
16796193 |
T |
|
| Q |
314 |
tggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgat |
413 |
Q |
| |
|
|| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| || || || ||| |
|
|
| T |
16796192 |
tgattcaaaaactgggtttggtttagcagagctacacaacttacaattaggaggcaggctatacatcaaaggccttgagaatgtgttaaatgaggaggat |
16796093 |
T |
|
| Q |
414 |
gctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggcgatg |
477 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||||||| | |||||||||||||||| |||| |
|
|
| T |
16796092 |
gctagaaaagctaatttgattggcaagaaagacttaaatcacctatatttgtcatggggtgatg |
16796029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 17068830 - 17068324
Alignment:
| Q |
16 |
ctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaacttt |
115 |
Q |
| |
|
|||| |||||||||| | || ||||| |||||||||| |||||||||| |||||| ||||||||||||||| |||||| | ||| ||||||||| || |
|
|
| T |
17068830 |
ctctccgagctttacgttcaggttcttatcaactctcgtcattgaagaatttaatacatttgaggtacttggaactttacagaagtggcatcacaacctt |
17068731 |
T |
|
| Q |
116 |
acctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaaggac |
215 |
Q |
| |
|
|||| |||||||||| |||||| ||| | |||||||| ||||||||| |||| |||| ||||||| ||||||| ||||| ||||| |
|
|
| T |
17068730 |
gcctgcgtctgtttgtaaactgcataaactgcaaacacttaaacttgaatattgctcttatttctctagttttcccgaacaattcaacaaattgcaggac |
17068631 |
T |
|
| Q |
216 |
cttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttg |
315 |
Q |
| |
|
|||||||||||||||| |||| |||| | ||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17068630 |
cttcgacatctcatgattaaagattgtcaatcattgaaatcaagtccttttagaattggggagttaactagtctgaaaacattgaccaatttcatagttg |
17068531 |
T |
|
| Q |
316 |
gtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgc |
415 |
Q |
| |
|
|| | ||||||| | |||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||| |||||||| | || ||||| ||||| |
|
|
| T |
17068530 |
attcaaaaactggttatggtttagcagagctacaaaacttacaattaggaggcaagctacacatcaaaggccttcagaatgtgtcgaaagaagaggatgc |
17068431 |
T |
|
| Q |
416 |
tagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggcgatgatgtgaattcaa-------cggtgttgatgctgagcga |
508 |
Q |
| |
|
|| | |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
17068430 |
taaaaaagctaatttgaatggcaagaaggacttaaatagcttatatttgtcatggggtgatgaagctaattcaaaagttggcggtgttgatgctgagcga |
17068331 |
T |
|
| Q |
509 |
gtactgg |
515 |
Q |
| |
|
||||||| |
|
|
| T |
17068330 |
gtactgg |
17068324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 3 - 471
Target Start/End: Complemental strand, 16657352 - 16656884
Alignment:
| Q |
3 |
ctatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtg |
102 |
Q |
| |
|
||||||| |||||||| ||||||||| || ||||||| |||||||||| |||||||||| |||||| ||||||||||||||| |||| | ||| |
|
|
| T |
16657352 |
ctatcaagcactcctctccgagctttatgtataagttcttatcaactctcgtcattgaagaatttaatacatttgaggtacttggttctttacggaagtg |
16657253 |
T |
|
| Q |
103 |
acatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgc |
202 |
Q |
| |
|
| |||||||| || |||| ||| |||||| ||| || ||||| |||||||| |||||| | |||| ||||| |||||| |||||||| | |
|
|
| T |
16657252 |
atatcacaaccttgcctgcgtctttttgtaaacttcaaaaattgcaaacacttaaacttctaagttgttattttttatctagttttccaaaacaattcac |
16657153 |
T |
|
| Q |
203 |
agaattgaaggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgacc |
302 |
Q |
| |
|
| ||||| ||||||||||||||||||| | ||||| ||| || ||||||| |||||||||||||| ||||||| |||||||| |||| ||||||||| | |
|
|
| T |
16657152 |
aaaattgcaggaccttcgacatctcattattaaaagttgtccatcattgaaatcaactccttttaaaattggggagttaactagtctccaaacattgaac |
16657053 |
T |
|
| Q |
303 |
aatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgccta |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | | |
|
|
| T |
16657052 |
tatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacatcaaaggccttgagaatgtgtcaa |
16656953 |
T |
|
| Q |
403 |
acgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggg |
471 |
Q |
| |
|
|| || ||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
16656952 |
ttgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcgcttatatttgtcatggg |
16656884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 15 - 472
Target Start/End: Complemental strand, 16787295 - 16786838
Alignment:
| Q |
15 |
cctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaactt |
114 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| || |||||||||||| |||| | || |||||||| | |
|
|
| T |
16787295 |
cctcttcgagctttacatgcaagttttcatcaactctcatcattgatgagtttaattcacttgaggtacttggaactcaaccaaagtcccatcacaatct |
16787196 |
T |
|
| Q |
115 |
tacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaagga |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||| | |||||| |||||||| |||||||||||| |
|
|
| T |
16787195 |
taccaggttctgtttgtagactgcagaaattgcaaacactaaaacttgaacgttgtcattttctatccagttttcctaaacaattgatagaattgaagga |
16787096 |
T |
|
| Q |
215 |
ccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagtt |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||| ||||||| |||| |||||||||||||||| | ||| |||||| ||| |
|
|
| T |
16787095 |
ccttcgacatctcatgattaaaaattgccattcattgatgtcatctccttttaaaattgggaagttcacttgtctgaaaacatggtccattttcattgtt |
16786996 |
T |
|
| Q |
315 |
ggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatg |
414 |
Q |
| |
|
| || | ||||||| | ||||||||| |||||| |||| || |||||||||| || ||| |||| ||| ||||||||||| | || ||||| ||| |
|
|
| T |
16786995 |
gattcaaaaactggttatggtttagccgagctatgcaacctataattaggaggaaatctacacatcaaagtccttgagaatgtatcgaatgaagagcatg |
16786896 |
T |
|
| Q |
415 |
ctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16786895 |
ctagagacgctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
16786838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 12 - 472
Target Start/End: Complemental strand, 16780506 - 16780045
Alignment:
| Q |
12 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaa |
111 |
Q |
| |
|
|||||||| |||||||||| |||||| ||| ||| ||||| ||||||||| ||||||||||||| |||||||| |||||| | |||| || | || |
|
|
| T |
16780506 |
actcctctccgagctttacgtacaaggtcttgtcatctctctgcattgaagaatttaatgcatttgcggtacttggaactttacaagagtgatataaaaa |
16780407 |
T |
|
| Q |
112 |
ctttacctggttctgtttgtagactgc-agaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattga |
210 |
Q |
| |
|
| || |||| |||||||||||| ||| ||||||| |||||||| |||||||||| ||||| |||| |||||| |||||||| || ||||| |
|
|
| T |
16780406 |
ccttgcctgcgtctgtttgtagattgccagaaattgcaaacacttaaacttgaaggttgtgattatctttctagttttccgaaacaattgacacaattgc |
16780307 |
T |
|
| Q |
211 |
aggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcat |
310 |
Q |
| |
|
| |||||| ||||||| | | || ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |
|
|
| T |
16780306 |
atgaccttagacatcttgttattattgcttgccagagattgacatcaactccttttagaattggggagttaacttgtctgaaaacattgactactttcat |
16780207 |
T |
|
| Q |
311 |
agttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagat |
410 |
Q |
| |
|
||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| ||| |||| ||| || ||||| |
|
|
| T |
16780206 |
tgttggttcaaaaaatgggtttggtttagcagagctacacaacttgcaattaggaggcaagctacacatcaaaggccttcagaaagtgttgaatgaagag |
16780107 |
T |
|
| Q |
411 |
gatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16780106 |
gatgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
16780045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 328 - 472
Target Start/End: Original strand, 18807348 - 18807492
Alignment:
| Q |
328 |
ggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaa |
427 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||||||||||||| |||| ||| ||||||||||| ||| ||| ||||||| ||||||||| |
|
|
| T |
18807348 |
ggtttggtttagcagagttacatgacttacaactaggaggcaagctacacatcagaggccttgagaatgtatctagtgaatgggatgctaaagaagctaa |
18807447 |
T |
|
| Q |
428 |
tttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
||||||||| || ||||| |||||| |||| || |||||||||| |
|
|
| T |
18807448 |
tttgattggtaaaaaggagttaaattgcttgtacctgtcatgggg |
18807492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 436
Target Start/End: Complemental strand, 16842885 - 16842710
Alignment:
| Q |
261 |
ccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaat |
360 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| |||||||| || |||||| || ||| ||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
16842885 |
ccttttaaaattggggggttaactcatctgagaacattgagcattttcattgtacgttcagaggctgggtttggtttagcagagctacataacttagaac |
16842786 |
T |
|
| Q |
361 |
taggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattgg |
436 |
Q |
| |
|
|| ||||||| ||| |||| |||| ||||| |||||| | || ||| ||||||||||||||||| || ||||| |
|
|
| T |
16842785 |
taagaggcaaactacacatcaaaggccttgaaaatgtgacgaatgaaagggatgctagagaagctaagttaattgg |
16842710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 16843134 - 16843053
Alignment:
| Q |
12 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaacttt |
93 |
Q |
| |
|
|||||||| ||||| |||| |||||||||| |||||||||| | ||||||| |||||| ||||||||||||||| |||||| |
|
|
| T |
16843134 |
actcctctccgagcattacgtacaagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttt |
16843053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 472
Target Start/End: Original strand, 18874344 - 18874489
Alignment:
| Q |
327 |
gggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagcta |
426 |
Q |
| |
|
||||||||||||||| || |||| || ||||| |||||||||||||| |||| ||| ||||||||||| ||| ||| ||||||| |||||||| |
|
|
| T |
18874344 |
gggtttggtttagcacagttacatgacctacaactaggaggcaagctacacatcagaggccttgagaatgtatctagtgaatgggatgctaaagaagcta |
18874443 |
T |
|
| Q |
427 |
atttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
|||||||||| || ||||| |||||| |||| || |||||||||| |
|
|
| T |
18874444 |
atttgattggtaaaaaggagttaaatcgcttgtacctgtcatgggg |
18874489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 12174 - 11723
Alignment:
| Q |
18 |
cttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttac |
117 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||| ||||||| ||||||||| ||| || || | |
|
|
| T |
12174 |
cttcgagctttacatacaaagtctcatcgactctcatcatcaaa---tttaatgcatttgaggtacttggaactttcatcttgtgacttcattaccttgc |
12078 |
T |
|
| Q |
118 |
ctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaaggacct |
217 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||||||| | ||| |||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
12077 |
ctggttctgtttgcagactacagaaattgcaaacactaaaacttgaaaaatgtcatcatctatctgattttcccaaacaatttacaaaattgaaggacct |
11978 |
T |
|
| Q |
218 |
tcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggt |
317 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
11977 |
tcgacatctcatgattaaaaattgcagttcattgaaatcaactccttttaaaattggggagttaacttgtctgaaaacattgaccattttcattgttggt |
11878 |
T |
|
| Q |
318 |
ttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgcta |
417 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| ||| |||| ||| | | ||||| ||||| | |
|
|
| T |
11877 |
tcaaaaactgggtttggtttagcagagctacacaacttacaattaggaggaaagctacacattaaaggccttcagaaagtgtcgattgaagaggatgcaa |
11778 |
T |
|
| Q |
418 |
gagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11777 |
gaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
11723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 7807 - 7351
Alignment:
| Q |
16 |
ctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaacttt |
115 |
Q |
| |
|
||||||||| ||| | |||| |||| || ||||||||| ||||||||||||| ||||||||||||||||| || ||| | || |||||||||| || |
|
|
| T |
7807 |
ctcttcgagttttgcttacacgttcaaatgaactctcattattgaagagtttagtgcatttgaggtacttggaaatttatgatagtaacatcacaacctt |
7708 |
T |
|
| Q |
116 |
acctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaaggac |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
7707 |
gcctgggtctgtttgtagactgcagaaattgcaaacactaaaacttgaacgttgccatttgctatctagttttcccaaacaatttacaaaattgaaggac |
7608 |
T |
|
| Q |
216 |
cttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttg |
315 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| | |||||| |||| |
|
|
| T |
7607 |
cttcgacatctcatgattaaaaattgccattcattgatatcagctccttttagaattgggcagttaactagcctgaaaacattgacgattttcattgttg |
7508 |
T |
|
| Q |
316 |
gtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgc |
415 |
Q |
| |
|
||| | ||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||| || |||||||||||||| | |||||||| ||||| |
|
|
| T |
7507 |
gttcaaaaactgggtatggtttagcacagctacacaacttacagttaggaggcaagctacacatcaaatgtcttgagaatgtgtcgaacgaagaggatgc |
7408 |
T |
|
| Q |
416 |
tagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||| || | ||||||||||| ||||| |
|
|
| T |
7407 |
tagagaaactaatttgattagcaagaaggacttggatcgtttatatttgtcttgggg |
7351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 12 - 472
Target Start/End: Complemental strand, 17383 - 16923
Alignment:
| Q |
12 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaa |
111 |
Q |
| |
|
||||| || |||||||||| || ||||| | ||| ||||| |||| |||| ||||||||||||| |||||||| |||||| | |||| || | || |
|
|
| T |
17383 |
actccactccgagctttacgtataagtttttgtcatctctctgcattaaagaatttaatgcatttgcggtacttggaactttacatgagtgatataagaa |
17284 |
T |
|
| Q |
112 |
ctttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaa |
211 |
Q |
| |
|
| || || | ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||| |||||| |||||||| || ||||| | |
|
|
| T |
17283 |
ccttgcccgcgtctgtttgtagactgcagaaattgcaaacacttaaacttgaaggttgtgatattctttctagttttccgaaacaattgacacaattgca |
17184 |
T |
|
| Q |
212 |
ggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcata |
311 |
Q |
| |
|
|||||| ||||||| | | || ||||| ||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
17183 |
tgaccttagacatcttgttattattgcttgccggagattgacatctactcctttcagaattggggagttaacttgtctgaaaacattgaccactttcatt |
17084 |
T |
|
| Q |
312 |
gttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatg |
411 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||| |||| ||| | || ||||| | |
|
|
| T |
17083 |
gttggttcaaaaactgggtttggtttagtagagctacacaacttacaattaggaggcaagctacacatcaaaggccttcagaaagtgtcgaatgaagagg |
16984 |
T |
|
| Q |
412 |
atgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
|||| | | |||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
16983 |
atgcaaaacaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcttgggg |
16923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 469
Target Start/End: Complemental strand, 35404 - 34938
Alignment:
| Q |
3 |
ctatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtg |
102 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||| ||||||||||||||| | |||| | ||| |
|
|
| T |
35404 |
ctatcaagcactcctctccgagctttatgtacaagttcttatcaactctcgtcattgaagaatttaatacatttgaggtacttggatctttacgtaagtg |
35305 |
T |
|
| Q |
103 |
acatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgc |
202 |
Q |
| |
|
| |||||||| || | || ||||||||| ||| || ||||| |||||||| |||||| || |||| ||||| ||||||||||||||| | |
|
|
| T |
35304 |
atatcacaaccttgcgtgcgtctgtttgtgaactacaaaaattgcaaacacttaaacttcaacgttgttattttttatctagttttcccaaacaattcac |
35205 |
T |
|
| Q |
203 |
agaattgaaggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgacc |
302 |
Q |
| |
|
||||| || |||||||||||||| ||| ||||| ||| || |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
35204 |
caaattgcagaaccttcgacatctcgtgattaaaacttgtccgtcattgctatcaactccttttagaattggggagttaacttgtttgaaaacattgacc |
35105 |
T |
|
| Q |
303 |
aatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgccta |
402 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| | |
|
|
| T |
35104 |
aatttcatagttggttcagaaactgagtttggtttagcagagctacacaacttacaattaggaggcaagctatacatcaatggccttgagaatgtgtcgg |
35005 |
T |
|
| Q |
403 |
acgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatg |
469 |
Q |
| |
|
| || || ||||||||| |||| ||||||||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
35004 |
atgaggaggatgctagaaaagcaaatttgattggcaagaaagacttaaatcgcttatatttgtcatg |
34938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 3 - 471
Target Start/End: Complemental strand, 36830 - 36362
Alignment:
| Q |
3 |
ctatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtg |
102 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||| ||||||||||||||| |||||| | ||| |
|
|
| T |
36830 |
ctatcaagcactcctctccgagctttacgtaccagttcttatcaactctcgtcattgaagaatttaatacatttgaggtacttggaactttacagaagtg |
36731 |
T |
|
| Q |
103 |
acatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgc |
202 |
Q |
| |
|
| |||||||| || |||| |||||||||| ||| || ||||| |||||||| |||||| || |||| ||||| |||||||||| ||| | |
|
|
| T |
36730 |
atatcacaaccttgcctgcgtctgtttgtaaactacaaaaattgcaaacacttaaacttcgaggttgttgttttttatctagttttcccaaaacattcac |
36631 |
T |
|
| Q |
203 |
agaattgaaggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgacc |
302 |
Q |
| |
|
| ||||| ||||||||||||||||||| | | || |||| || ||||||| |||||||||||||| ||||||| |||||||| |||| ||||||||||| |
|
|
| T |
36630 |
aaaattgcaggaccttcgacatctcattattgaagattgtccatcattgaaatcaactccttttaaaattggggagttaactagtctccaaacattgacc |
36531 |
T |
|
| Q |
303 |
aatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgccta |
402 |
Q |
| |
|
||||||||||||| || | ||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| | | |
|
|
| T |
36530 |
aatttcatagttgattcaaaaattggttttcgtttagcagagctacacaacttacaattaggaggcaagttatacatcaaaggccttgagaatgtgtcaa |
36431 |
T |
|
| Q |
403 |
acgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggg |
471 |
Q |
| |
|
| || || ||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
36430 |
atgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcgcttatatttgtcatggg |
36362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 460
Target Start/End: Original strand, 2892 - 3075
Alignment:
| Q |
277 |
agttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctata |
376 |
Q |
| |
|
||||||||||||| |||||||||| || |||||| || |||| | | ||||| |||||||||||| ||| ||||||||||||||||||||||| | |
|
|
| T |
2892 |
agttaacttgtctaaaaacattgagcactttcatcgtgggttcgaagatggggttcggtttagcagagttacgtgacttacaattaggaggcaagctaca |
2991 |
T |
|
| Q |
377 |
cattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttata |
460 |
Q |
| |
|
||| |||| |||||||||||| | | ||| ||||||| |||||||||||||||||| || ||||| || ||| ||||||| |
|
|
| T |
2992 |
catcaaaggccttgagaatgtgtcaagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttgaatcgcttata |
3075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 12 - 472
Target Start/End: Original strand, 38940186 - 38940646
Alignment:
| Q |
12 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaa |
111 |
Q |
| |
|
|||||||| |||||||||| |||||| ||| ||| ||||| ||||||||| ||||||||||||| |||||||| |||||| |||| |||| ||||||| |
|
|
| T |
38940186 |
actcctctccgagctttacgtacaaggtcttgtcatctctctgcattgaagaatttaatgcatttgcggtacttggaacttttctctagtgatatcacaa |
38940285 |
T |
|
| Q |
112 |
ctttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaa |
211 |
Q |
| |
|
| || |||| ||||||||||| |||| |||||| ||||||||||||||||||| |||| |||| ||||||||||||||| || || || | |
|
|
| T |
38940286 |
ccttgcctgtgtctgtttgtaggctgctgaaattgcaaacactaaaacttgaaggttgtaattatctttctagttttcccaaacaattgacaaaactgca |
38940385 |
T |
|
| Q |
212 |
ggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcata |
311 |
Q |
| |
|
| |||||| ||||||||||| ||||||||| | ||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||| |
|
|
| T |
38940386 |
gaaccttcaacatctcatgattaaaaattgtcgatcattgaaatcaactccttttagaattggggagttaacttgtttgaaaaaattgaccattttcatt |
38940485 |
T |
|
| Q |
312 |
gttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatg |
411 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||| | || || | || |||| | |
|
|
| T |
38940486 |
gttggttcaaaaactggttttggtttagcagagctacacaacttacaattaggaggcaagctacatatcaaaggccttcaaaaagtctcgaataaagagg |
38940585 |
T |
|
| Q |
412 |
atgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38940586 |
atgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
38940646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 21 - 461
Target Start/End: Original strand, 7054108 - 7054548
Alignment:
| Q |
21 |
cgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttacctg |
120 |
Q |
| |
|
|||||||||| |||||||||| | ||| ||| | |||| || ||||||||||||||||||| | |||||| | | || |||||||| || |||| |
|
|
| T |
7054108 |
cgagctttacgtacaagttcttttggactgtcagctttgaggaatttaatgcatttgaggtacctagaactttgccatagtaggatcacaaccttgcctg |
7054207 |
T |
|
| Q |
121 |
gttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaaggaccttcg |
220 |
Q |
| |
|
| |||||||||||||||||||| || ||||||||||||||| |||| || ||| ||| ||||||||||| | ||||| | || ||| | |
|
|
| T |
7054208 |
ggtctgtttgtagactgcagaagttgcaaacactaaaacttaaagactgcccttatttttctcatttccccaaacaattgacgcaattgcaagaacttag |
7054307 |
T |
|
| Q |
221 |
acatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggttta |
320 |
Q |
| |
|
|||| || ||| | ||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| |||||| ||||| | | |
|
|
| T |
7054308 |
acatatcgtgattgaaaattgtttttcattagtatcaactccctttagaattggggagttaacttgtctgaaaacattgaccgttttcattgttggatca |
7054407 |
T |
|
| Q |
321 |
gaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagag |
420 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||| |||||||||||| | ||||| | |||||||||| |
|
|
| T |
7054408 |
aaaactgggtttggtttagcagagttacacaacttacaattaggaggcatgcttcacatcagaggccttgagaatgtgtccaacgacggggatgctagag |
7054507 |
T |
|
| Q |
421 |
aagctaatttgattggaaagaaggacttaaatagcttatat |
461 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
7054508 |
aagctaatttgattggcaataaggacttaaatcgcttatat |
7054548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 12 - 472
Target Start/End: Complemental strand, 8488 - 8028
Alignment:
| Q |
12 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaa |
111 |
Q |
| |
|
|||||||| |||| ||||| |||||| ||| || ||||| ||||||||||||||||||||||| |||||||| |||||| | | || | ||||||| |
|
|
| T |
8488 |
actcctctccgagttttacgtacaaggtcttgccatctctctgcattgaagagtttaatgcatttgcggtacttggaactttacgatagtaatatcacaa |
8389 |
T |
|
| Q |
112 |
ctttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaa |
211 |
Q |
| |
|
| || || | |||||||||| |||||||||||| |||||||| ||||||||| ||||| |||| |||||| |||||||| || || | | |
|
|
| T |
8388 |
ccttgcccgcgtctgtttgtaaactgcagaaattgcaaacacttaaacttgaatattgtcttcatctttctagttttccaaaacaattgacaaaactaca |
8289 |
T |
|
| Q |
212 |
ggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcata |
311 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||| |
|
|
| T |
8288 |
ggaccttcaacatctcatgattaaaaattgcatatcattgaaatcaactccttttagaattggggagttaacttgtttgaaaaaattgaccattttcatt |
8189 |
T |
|
| Q |
312 |
gttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatg |
411 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| || | ||| | || ||| | || ||||| | |
|
|
| T |
8188 |
gttggttcaaaaactgggtatggtttagcagagctacaaaacttacaattaggaggcaagctacacatcaaacgccttcacaaagtgtcaaatgaagagg |
8089 |
T |
|
| Q |
412 |
atgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8088 |
atgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
8028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 12 - 472
Target Start/End: Complemental strand, 13377420 - 13376960
Alignment:
| Q |
12 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaa |
111 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||| ||| ||||||||||| |||||| || | ||||||| |
|
|
| T |
13377420 |
actcctctccgagctttacgtacaagttcttttcaactctcaggattgaagaatataattcatctgaggtacttggaactttatgaaagtaagatcacaa |
13377321 |
T |
|
| Q |
112 |
ctttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaa |
211 |
Q |
| |
|
| || |||| |||||||| || ||||||||||| ||||| ||||||||||| ||||| |||| |||||| ||| ||||| || ||||| | |
|
|
| T |
13377320 |
ccttgcctgagtctgtttgcaggctgcagaaattgcaaaccttaaaacttgaacgttgtgattctctttctagttttccaaaaaaatttacacaattgga |
13377221 |
T |
|
| Q |
212 |
ggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcata |
311 |
Q |
| |
|
|||||| ||||||| || | |||| |||||| |||||| |||||| ||| |||||||| || ||||||||||||||||||||||||||| |||||| |
|
|
| T |
13377220 |
agaccttagacatcttattattaaagattgccagtcattggtatcaagtccatttagaatcagggagttaacttgtctgaaaacattgaccattttcatt |
13377121 |
T |
|
| Q |
312 |
gttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatg |
411 |
Q |
| |
|
||||| | |||| ||||||||||||||| ||||| || ||||||||||||||||| || ||| |||| ||| ||| |||||||| | ||||||| | |
|
|
| T |
13377120 |
gttggctcggaaattgggtttggtttagctgagctgcaaaacttacaattaggaggaaaactacacatcagaggccttcagaatgtgtcaaacgaagggg |
13377021 |
T |
|
| Q |
412 |
atgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13377020 |
atgctaaagaagctaatttgattggaaagaaagacttaaatcacttatatttgtcatgggg |
13376960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 3 - 469
Target Start/End: Complemental strand, 20153781 - 20153317
Alignment:
| Q |
3 |
ctatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtg |
102 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||||| || |||||||||| || |||||| |||||| ||||||||||||||| |||||| ||| |
|
|
| T |
20153781 |
ctatcaagcactcctctccgagctttacgtacaagtccttttcaactctcaacaatgaagactttaatacatttgaggtacttggaactttatgacagtg |
20153682 |
T |
|
| Q |
103 |
acatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgc |
202 |
Q |
| |
|
| || | ||| || | | || |||||||||||||||||| || |||||||||||||||||| ||||| | || ||| ||||||||||| | |
|
|
| T |
20153681 |
atataaaaaccttgcacgattgtgtttgtagactgcagaagttgcaaacactaaaacttgaaaattgttattttttacgtagtttccccaaacaattgac |
20153582 |
T |
|
| Q |
203 |
agaattgaaggaccttcgacatctcatgactaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgacc |
302 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20153581 |
gaaattgcaggaccttcgacatctcatgattaaaaattgcctatcattcatattaactccttttagaattggggagttaacttgtctgaaaacattgacc |
20153482 |
T |
|
| Q |
303 |
aatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgccta |
402 |
Q |
| |
|
| |||||| ||||||| | ||||| ||| |||||||| ||||||| |||| |||||||||||||| ||||||||||| || | || |||||||| | | |
|
|
| T |
20153481 |
actttcattgttggttcaaaaact-ggtatggtttagaagagctaaacaagttacaattaggaggaaagctatacatcaaaagcctcaagaatgtgtcaa |
20153383 |
T |
|
| Q |
403 |
acgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatg |
469 |
Q |
| |
|
| ||||| ||||||||| || |||||||||| | ||| ||||| |||| ||||||||||||||| |
|
|
| T |
20153382 |
atgaagagtatgctagaggagataatttgattagcaag-aggacataaaacacttatatttgtcatg |
20153317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 277 - 472
Target Start/End: Complemental strand, 8410 - 8215
Alignment:
| Q |
277 |
agttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctata |
376 |
Q |
| |
|
||||||||||||| ||||| || | || |||||| || ||||| | | |||||||||||||||||| |||| |||||||| |||||||||||||| | |
|
|
| T |
8410 |
agttaacttgtctcaaaactttaagcactttcattgtgggtttgaaggcggggtttggtttagcagagttacatgacttacaactaggaggcaagctaca |
8311 |
T |
|
| Q |
377 |
cattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
||| ||| ||||||||||| ||| ||| ||||||| |||||||||||||||||| || ||||| |||||| |||| || ||||||||||| |
|
|
| T |
8310 |
catcagaggccttgagaatgtatctagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttaaatcgcttgtacttgtcatgggg |
8215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 472
Target Start/End: Complemental strand, 3679 - 3534
Alignment:
| Q |
327 |
gggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagcta |
426 |
Q |
| |
|
|||||||||||||||||| || | |||||||| ||||||||| |||| |||| |||| ||||||||||| ||| ||| ||||||| |||||||| |
|
|
| T |
3679 |
gggtttggtttagcagagttaaatgacttacaactaggaggcaggctacacatcaaaggccttgagaatgtatctagtgaatgggatgctaaagaagcta |
3580 |
T |
|
| Q |
427 |
atttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
472 |
Q |
| |
|
|||||||||| || ||||| |||||| |||| || ||||||||||| |
|
|
| T |
3579 |
atttgattggtaaaaaggagttaaatcgcttgtacttgtcatgggg |
3534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University