View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_110 (Length: 232)
Name: NF1863_low_110
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_110 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0729 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 16409735 - 16409948
Alignment:
| Q |
19 |
aatatctgcctggaatttgaatccataattactaccgatccaaggaagagaaggtacaatgtgttcttgagtttctacgctcaggacaaaggttattttc |
118 |
Q |
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| T |
16409735 |
aatatctgcctggaatttgaatccatatttactaccgatccaaggaagagaaggtacaatgtgttcttgagtttctacgctcaggacaaaggttattttc |
16409834 |
T |
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| Q |
119 |
tttcgaatctcgaagaggctcttagtttagaagctggtatcgatgtttttggggtcattaagaggtttcaacatggagaacgggcagagtctgtgctgaa |
218 |
Q |
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| T |
16409835 |
tttcgaatctcgaagaggctcttagtttagaagctggtatcgatgtttttggggtcattaagaggtttcaacatggagaacgggcagagtctgtgctgaa |
16409934 |
T |
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| Q |
219 |
tgtaattcaagact |
232 |
Q |
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|||||||||||||| |
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| T |
16409935 |
tgtaattcaagact |
16409948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 6594305 - 6594104
Alignment:
| Q |
22 |
atctgcctggaatttgaatccataattactaccgatccaaggaagagaaggtacaatgtgttcttgagtttctacgctcaggacaaaggttattttcttt |
121 |
Q |
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| T |
6594305 |
atctgccaggaatttgaatccatattaactaccgatccaaagaagagaaggtacaacgtgttcttgagtttctgcgctcacgataagggttattttcttt |
6594206 |
T |
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| Q |
122 |
cgaatctcgaagaggctcttagtttagaagctggtatcgatgtttttggggtcattaagaggtttcaacatggagaacgggcagagtctgtgctgaatgt |
221 |
Q |
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| T |
6594205 |
cgagtctcgaagaggctcttagtttagaagctggtatcaatgtttttggggacattaagaggtttcagcat---------gtagagtctgtgctgaatgt |
6594115 |
T |
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| Q |
222 |
aattcaagact |
232 |
Q |
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| T |
6594114 |
aattcaagact |
6594104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 6791323 - 6791482
Alignment:
| Q |
70 |
aggtacaatgtgttcttgagtttctacgctcaggacaaaggttattttctttcgaatctcgaagaggctcttagtttagaagctggtatcgatgtttttg |
169 |
Q |
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| T |
6791323 |
aggtacaatgtgttcttgagtttctgcgctcaagacatgggttattttctttcacgtctccatacggctcttagttcacaagctggaatcgttgtttttg |
6791422 |
T |
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| Q |
170 |
gggtcattaagaggtttcaacatggagaacgggcagagtctgtgctgaatgtaattcaagact |
232 |
Q |
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|| || ||||||||||||||||||||| || |||||| | |||||||||||||||||||| |
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| T |
6791423 |
aggaca---agaggtttcaacatggagaacaggtagagtcagcgctgaatgtaattcaagact |
6791482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 7306 - 7147
Alignment:
| Q |
70 |
aggtacaatgtgttcttgagtttctacgctcaggacaaaggttattttctttcgaatctcgaagaggctcttagtttagaagctggtatcgatgtttttg |
169 |
Q |
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||||||||||||||||||||||||| |||||| |||| |||||||||||||| |||| | ||||||||||| | ||||||| |||| |||||||| |
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| T |
7306 |
aggtacaatgtgttcttgagtttctgcgctcaagacatgggttattttctttcacgtctccatacggctcttagttcacaagctggaatcgttgtttttg |
7207 |
T |
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| Q |
170 |
gggtcattaagaggtttcaacatggagaacgggcagagtctgtgctgaatgtaattcaagact |
232 |
Q |
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|| || ||||||||||||||||||||| || |||||| | |||||||||||||||||||| |
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| T |
7206 |
aggaca---agaggtttcaacatggagaacaggtagagtcagcgctgaatgtaattcaagact |
7147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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