View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_low_112 (Length: 228)
Name: NF1863_low_112
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_112 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 5850722 - 5850588
Alignment:
| Q |
12 |
agattatactgacttcacggacaaactttagattaattatcaaggtctccctccccttggctacgagagagttaccacacacacnnnnnnngttaaagtg |
111 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5850722 |
agattatactgatctcacggacaaactttagattaattatcagggtctccctccccttggctacgagagagttaccacacacacaaaaaaagttaaagtg |
5850623 |
T |
|
| Q |
112 |
tcaaaataagaagaataaatttatcaattaagtga |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5850622 |
tcaaaataagaagaataaatttatcaattaagtga |
5850588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 5887980 - 5887941
Alignment:
| Q |
107 |
aagtgtcaaaataagaagaataaatttatcaattaagtga |
146 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5887980 |
aagtgtcaaaataagatgaataaatttatcaattaagtga |
5887941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 5850527 - 5850499
Alignment:
| Q |
182 |
gttaactaaatataaaagtatgccaacat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5850527 |
gttaactaaatataaaagtatgccaacat |
5850499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University