View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_low_118 (Length: 217)

Name: NF1863_low_118
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_low_118
NF1863_low_118
[»] chr4 (9 HSPs)
chr4 (17-208)||(35335547-35335738)
chr4 (17-217)||(35335406-35335606)
chr4 (17-214)||(35335277-35335474)
chr4 (141-208)||(16592029-16592096)
chr4 (131-208)||(16602469-16602546)
chr4 (127-215)||(35335672-35335760)
chr4 (138-198)||(16591906-16591966)
chr4 (17-76)||(16592037-16592096)
chr4 (31-76)||(16602501-16602546)
[»] chr1 (1 HSPs)
chr1 (124-170)||(24541009-24541055)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 35335738 - 35335547
Alignment:
Q  17 caacccatcgtcatcatcaacatcctcctgctcacacccctgttcaacctccaacacatcaccaccactctcctgctcatgcccctgttcacaaacatgt 116  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35335738 caacccatcgccatcatcaacatcctcctgctcacgcccctgttcaacctccaacacatcaccaccactctcctgctcatgcccctgttcacaaacatgt 35335639  T
Q  117 tccaattcatcctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatc 208  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||| ||||    
T  35335638 tccagttcatcctcctcaccatgctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattcaacctccaacacatc 35335547  T

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Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 35335606 - 35335406
Alignment:
Q  17 caacccatcgtcatcatcaacatcctcctgctcacacccctgttcaacctccaacacatcaccaccactctcctgctcatgcccctgttcacaaacatgt 116  Q
    |||||||||  | |||||||||  ||||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||    
T  35335606 caacccatcaccgtcatcaacacactcctgctcattcccctattcaacctccaacacatcgccatcactctcctgctcatgctcctattcacaaacatgt 35335507  T
Q  117 tccaattcatcctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccag 216  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  35335506 tccagttcatcctcctcatcatgctaaacctccaacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaacgcatcaccaccag 35335407  T
Q  217 c 217  Q
    |    
T  35335406 c 35335406  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 35335474 - 35335277
Alignment:
Q  17 caacccatcgtcatcatcaacatcctcctgctcacacccctgttcaacctccaacacatcaccaccactctcctgctcatgcccctgttcacaaacatgt 116  Q
    ||||||||| ||  |||||||| |||||| ||||  ||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  35335474 caacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctgttcacaaacatgt 35335375  T
Q  117 tccaattcatcctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccacc 214  Q
    |||| | ||||||||||  ||||| ||||||||||| ||||||  |||||||| |||||   ||||| | | | ||||||| ||||| ||||||||||    
T  35335374 tccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcgcctattcaaccaccaacacatcaccacc 35335277  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 16592029 - 16592096
Alignment:
Q  141 taaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatc 208  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  16592029 taaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16592096  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 16602469 - 16602546
Alignment:
Q  131 ctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatc 208  Q
    |||| |||||||||||||||||||||| |  |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  16602469 ctcaccatgctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16602546  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 35335760 - 35335672
Alignment:
Q  127 cctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccacca 215  Q
    |||||||||||| ||||||| |||||||||| ||  |||||||| |||||||||||  ||| ||||||||||||||| |||||||||||    
T  35335760 cctcctcatcatactaaacccccaacccatcgccatcatcaacatcctcctgctcacgcccctgttcaacctccaacacatcaccacca 35335672  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 16591906 - 16591966
Alignment:
Q  138 tgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacct 198  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||| ||| | ||||||||    
T  16591906 tgctaaacctccaacccgtcaccaccaccaacaccctcctgctcatgcccctcttcaacct 16591966  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 16592037 - 16592096
Alignment:
Q  17 caacccatcgtcatcatcaacatcctcctgctcacacccctgttcaacctccaacacatc 76  Q
    |||||||||  || |||||||| |||||||||||  ||||||||||||||||||| ||||    
T  16592037 caacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16592096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 16602501 - 16602546
Alignment:
Q  31 catcaacatcctcctgctcacacccctgttcaacctccaacacatc 76  Q
    |||||||| |||||||||||  ||||||||||||||||||| ||||    
T  16602501 catcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16602546  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 24541055 - 24541009
Alignment:
Q  124 catcctcctcatcatgctaaacctccaacccatcaccgccatcaaca 170  Q
    ||||||||||| | ||| ||||||||||||||||||||||| |||||    
T  24541055 catcctcctcaccctgccaaacctccaacccatcaccgccaccaaca 24541009  T

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