View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_low_12 (Length: 519)

Name: NF1863_low_12
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_low_12
NF1863_low_12
[»] chr5 (24 HSPs)
chr5 (12-503)||(31113121-31113614)
chr5 (214-382)||(10591918-10592086)
chr5 (264-377)||(5123485-5123598)
chr5 (237-352)||(18909313-18909428)
chr5 (233-378)||(22187984-22188127)
chr5 (206-376)||(30784974-30785144)
chr5 (214-359)||(2798320-2798464)
chr5 (214-359)||(2804487-2804631)
chr5 (213-375)||(12682625-12682787)
chr5 (260-381)||(35774622-35774743)
chr5 (289-360)||(36212962-36213033)
chr5 (214-374)||(10795308-10795466)
chr5 (258-362)||(18244619-18244723)
chr5 (300-378)||(25983742-25983820)
chr5 (214-312)||(28023495-28023593)
chr5 (280-362)||(41446654-41446736)
chr5 (290-377)||(29553606-29553693)
chr5 (232-382)||(35914431-35914581)
chr5 (291-362)||(41433940-41434011)
chr5 (214-353)||(3525864-3526003)
chr5 (290-365)||(32313105-32313180)
chr5 (341-382)||(373746-373787)
chr5 (327-364)||(2760310-2760347)
chr5 (250-382)||(38951789-38951921)
[»] chr4 (32 HSPs)
chr4 (214-378)||(31307052-31307216)
chr4 (214-382)||(38766080-38766248)
chr4 (213-374)||(35334088-35334249)
chr4 (214-378)||(14854596-14854760)
chr4 (231-382)||(46016154-46016308)
chr4 (259-382)||(9012306-9012429)
chr4 (213-377)||(45994512-45994676)
chr4 (260-382)||(51626288-51626410)
chr4 (259-369)||(13948587-13948697)
chr4 (214-376)||(35972334-35972496)
chr4 (251-374)||(46250545-46250668)
chr4 (214-382)||(7096087-7096254)
chr4 (218-374)||(17135092-17135247)
chr4 (291-375)||(33529325-33529409)
chr4 (217-378)||(32005132-32005298)
chr4 (218-378)||(38844154-38844314)
chr4 (213-372)||(56447115-56447273)
chr4 (214-362)||(13686592-13686741)
chr4 (273-353)||(3649057-3649137)
chr4 (235-306)||(11140469-11140540)
chr4 (232-355)||(51853707-51853828)
chr4 (253-378)||(14042859-14042984)
chr4 (321-376)||(15133473-15133528)
chr4 (294-376)||(18841556-18841639)
chr4 (214-353)||(22189399-22189538)
chr4 (250-353)||(47023429-47023532)
chr4 (290-362)||(3976641-3976713)
chr4 (346-382)||(37241358-37241394)
chr4 (291-382)||(16994158-16994251)
chr4 (273-355)||(28408537-28408619)
chr4 (231-304)||(56425897-56425970)
chr4 (284-364)||(22017525-22017605)
[»] chr7 (34 HSPs)
chr7 (214-378)||(29059796-29059960)
chr7 (217-378)||(31492097-31492258)
chr7 (214-382)||(8839262-8839431)
chr7 (213-365)||(19477249-19477400)
chr7 (213-376)||(21747028-21747190)
chr7 (214-378)||(28537381-28537541)
chr7 (214-348)||(13254117-13254251)
chr7 (214-375)||(20207489-20207649)
chr7 (213-378)||(35707837-35708001)
chr7 (213-382)||(42741791-42741963)
chr7 (214-382)||(46373664-46373834)
chr7 (269-378)||(11486730-11486839)
chr7 (294-382)||(37339715-37339803)
chr7 (259-378)||(24172243-24172364)
chr7 (213-352)||(7265325-7265464)
chr7 (280-350)||(14545000-14545070)
chr7 (232-382)||(24579434-24579584)
chr7 (299-376)||(31776494-31776571)
chr7 (214-334)||(40099302-40099422)
chr7 (213-355)||(27484058-27484200)
chr7 (213-318)||(7190405-7190510)
chr7 (214-312)||(2657888-2657986)
chr7 (327-377)||(28665194-28665244)
chr7 (232-373)||(28828756-28828897)
chr7 (299-364)||(29428792-29428857)
chr7 (243-382)||(23933633-23933772)
chr7 (214-352)||(4059705-4059842)
chr7 (330-376)||(45778971-45779017)
chr7 (331-375)||(36821069-36821113)
chr7 (319-366)||(1424669-1424716)
chr7 (291-382)||(25241107-25241198)
chr7 (214-299)||(2371139-2371224)
chr7 (345-378)||(14552482-14552515)
chr7 (293-374)||(32469986-32470069)
[»] chr8 (22 HSPs)
chr8 (206-378)||(2743916-2744088)
chr8 (214-382)||(4125006-4125174)
chr8 (214-376)||(19715713-19715876)
chr8 (214-378)||(13468731-13468895)
chr8 (214-372)||(12958077-12958235)
chr8 (214-378)||(30935995-30936159)
chr8 (274-378)||(7839239-7839343)
chr8 (232-353)||(15682938-15683059)
chr8 (213-374)||(30055991-30056152)
chr8 (214-362)||(36994502-36994650)
chr8 (251-377)||(24988522-24988653)
chr8 (214-335)||(35206991-35207112)
chr8 (231-357)||(16701386-16701512)
chr8 (327-376)||(39086856-39086905)
chr8 (215-310)||(27121804-27121899)
chr8 (316-382)||(8521791-8521856)
chr8 (213-310)||(4321558-4321655)
chr8 (214-357)||(23981478-23981623)
chr8 (290-341)||(8034152-8034203)
chr8 (320-382)||(40320193-40320255)
chr8 (213-325)||(32422811-32422924)
chr8 (232-352)||(44638992-44639112)
[»] scaffold0182 (1 HSPs)
scaffold0182 (231-378)||(26339-26486)
[»] chr2 (33 HSPs)
chr2 (214-382)||(5394388-5394555)
chr2 (214-378)||(31579215-31579379)
chr2 (214-378)||(42745102-42745266)
chr2 (218-374)||(18105353-18105508)
chr2 (213-374)||(9438126-9438287)
chr2 (214-321)||(44732616-44732723)
chr2 (214-376)||(993745-993906)
chr2 (214-336)||(12133258-12133380)
chr2 (206-348)||(33756960-33757102)
chr2 (214-378)||(17981489-17981652)
chr2 (259-382)||(37179983-37180101)
chr2 (300-382)||(25423821-25423903)
chr2 (214-359)||(44752199-44752344)
chr2 (214-306)||(37568785-37568877)
chr2 (232-382)||(38463964-38464114)
chr2 (232-325)||(7157507-7157600)
chr2 (277-372)||(7020352-7020446)
chr2 (273-364)||(38743788-38743879)
chr2 (259-380)||(38372978-38373097)
chr2 (314-382)||(14551565-14551633)
chr2 (318-378)||(37092181-37092241)
chr2 (261-363)||(39401070-39401172)
chr2 (333-382)||(1682132-1682181)
chr2 (264-352)||(14121894-14121982)
chr2 (317-382)||(17655755-17655822)
chr2 (279-382)||(24412909-24413011)
chr2 (214-303)||(34483453-34483541)
chr2 (317-374)||(39562259-39562316)
chr2 (319-382)||(32642964-32643028)
chr2 (213-300)||(42905689-42905775)
chr2 (214-288)||(28365940-28366014)
chr2 (214-306)||(17627550-17627642)
chr2 (264-324)||(39314487-39314547)
[»] chr1 (39 HSPs)
chr1 (213-377)||(22022110-22022274)
chr1 (214-382)||(16756073-16756241)
chr1 (234-382)||(18428124-18428271)
chr1 (256-376)||(7242795-7242915)
chr1 (214-378)||(28724664-28724827)
chr1 (244-377)||(9780976-9781109)
chr1 (261-378)||(36806649-36806766)
chr1 (214-375)||(45806227-45806388)
chr1 (283-376)||(42297430-42297523)
chr1 (259-382)||(12035585-12035709)
chr1 (294-382)||(15642526-15642614)
chr1 (213-376)||(32534073-32534235)
chr1 (214-362)||(10841008-10841157)
chr1 (214-354)||(24801372-24801512)
chr1 (237-382)||(46864105-46864250)
chr1 (250-373)||(39547355-39547478)
chr1 (213-370)||(31733685-31733842)
chr1 (294-382)||(10367575-10367663)
chr1 (214-382)||(10750589-10750756)
chr1 (213-361)||(25655267-25655415)
chr1 (213-303)||(28506279-28506369)
chr1 (294-376)||(44913180-44913262)
chr1 (213-309)||(36982345-36982441)
chr1 (214-309)||(40019232-40019327)
chr1 (213-303)||(29124735-29124825)
chr1 (289-350)||(32883561-32883622)
chr1 (213-301)||(17600561-17600649)
chr1 (319-382)||(49071673-49071736)
chr1 (235-309)||(32883625-32883699)
chr1 (237-341)||(36522259-36522363)
chr1 (214-288)||(21774595-21774668)
chr1 (206-303)||(16552484-16552581)
chr1 (298-382)||(2044472-2044556)
chr1 (212-308)||(35540036-35540132)
chr1 (288-355)||(28286442-28286509)
chr1 (206-296)||(17888729-17888819)
chr1 (291-364)||(9639557-9639630)
chr1 (213-334)||(13546416-13546537)
chr1 (290-362)||(33721007-33721079)
[»] chr3 (26 HSPs)
chr3 (214-374)||(30995955-30996115)
chr3 (214-378)||(25224690-25224854)
chr3 (214-382)||(48204293-48204461)
chr3 (214-374)||(27763714-27763872)
chr3 (264-377)||(20861289-20861402)
chr3 (213-382)||(40294602-40294771)
chr3 (261-382)||(1642644-1642765)
chr3 (214-382)||(38331119-38331287)
chr3 (231-381)||(48210943-48211093)
chr3 (260-382)||(55123134-55123256)
chr3 (214-360)||(14352545-14352694)
chr3 (214-325)||(38088626-38088737)
chr3 (314-378)||(8757435-8757499)
chr3 (260-378)||(22288272-22288390)
chr3 (213-382)||(15283065-15283230)
chr3 (274-382)||(39950263-39950371)
chr3 (259-382)||(11767146-11767269)
chr3 (291-378)||(25739155-25739243)
chr3 (338-378)||(40318435-40318475)
chr3 (274-381)||(43621294-43621402)
chr3 (314-374)||(44941255-44941314)
chr3 (214-310)||(42514595-42514693)
chr3 (231-304)||(22755652-22755725)
chr3 (250-354)||(15446019-15446127)
chr3 (265-353)||(21223465-21223553)
chr3 (231-303)||(54877841-54877913)
[»] chr6 (19 HSPs)
chr6 (214-378)||(12411139-12411303)
chr6 (213-376)||(21910195-21910357)
chr6 (254-378)||(12836883-12837007)
chr6 (214-382)||(31412114-31412281)
chr6 (213-376)||(31107481-31107644)
chr6 (231-377)||(28099251-28099397)
chr6 (214-350)||(423646-423782)
chr6 (206-310)||(25084017-25084121)
chr6 (300-374)||(9536844-9536918)
chr6 (213-382)||(278382-278550)
chr6 (213-361)||(21028982-21029134)
chr6 (274-375)||(17177189-17177290)
chr6 (221-343)||(5944840-5944962)
chr6 (291-382)||(1534320-1534409)
chr6 (213-272)||(8507135-8507194)
chr6 (218-377)||(15614560-15614719)
chr6 (237-308)||(29185307-29185378)
chr6 (280-361)||(21028845-21028924)
chr6 (264-362)||(28933179-28933277)
[»] scaffold0009 (2 HSPs)
scaffold0009 (293-377)||(27212-27296)
scaffold0009 (211-298)||(32330-32417)
[»] scaffold0013 (1 HSPs)
scaffold0013 (319-382)||(29134-29197)
[»] scaffold0020 (1 HSPs)
scaffold0020 (214-288)||(167846-167918)
[»] scaffold0071 (1 HSPs)
scaffold0071 (250-354)||(16065-16173)
[»] scaffold0189 (1 HSPs)
scaffold0189 (244-360)||(10973-11089)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 503
Target Start/End: Original strand, 31113121 - 31113614
Alignment:
Q  12 agaacctgtgtgcgggaataagaaaccttggagagagcaataccaataagaaactctctagtatattaacgcaataaaaatgtcttcctaagagagagtg 111  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  31113121 agaacctgcgtgtgggaataagaaaccttggagagagcaataccaataagaaactctctagtatattaccacaataaaaatgtcttcctaagagagagtg 31113220  T
Q  112 cgctatggaagaaacaccttagtacagccaaaagtctgaaag--tannnnnnnnattggatgtccccgaaaggaaagtaaagtaaagtgtggactaaaga 209  Q
     |||||||||||||||||||||||||||||||||||||||||  |         |||||||||||||||| ||||||||||||||||||| |||||||||    
T  31113221 tgctatggaagaaacaccttagtacagccaaaagtctgaaagatttttttttttattggatgtccccgaagggaaagtaaagtaaagtgttgactaaaga 31113320  T
Q  210 acatttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagag 309  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31113321 acatttagatgagatgaaacgggtcttttttagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagag 31113420  T
Q  310 cctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgatttnnnnnnnnnnnnnnngtctgaaagtat 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||               ||||||||||||    
T  31113421 cctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacacaaaaaaaaaaagtctgaaagtat 31113520  T
Q  410 ttacaaggctaccggaaaactaccaaacagcaacaaaatcattattcacatccatagttttgaaaactgattcggtgatcgactcggtaaaggt 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31113521 ttacaaggctaccggaaaactaccaaacagcaacaaaatcattattcacatccatagttttgaaaactgattcggtgatcgactcggtaaaggt 31113614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 10591918 - 10592086
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| |||||||||||| ||||  ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||     
T  10591918 ttagatgagatggaacgggtctcttctagattaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagtctg 10592017  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10592018 ccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgattt 10592086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 5123598 - 5123485
Alignment:
Q  264 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  5123598 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcg 5123499  T
Q  364 cgcggaggataccc 377  Q
    ||||||||||||||    
T  5123498 cgcggaggataccc 5123485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 18909428 - 18909313
Alignment:
Q  237 ttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaata 336  Q
    |||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||   | |||| |||||| ||||||||||     
T  18909428 ttctagcttaatcaaggtcctaggttcgaatccagccttgggtatgcagcagtgttaaaactcttagggagaatttgccgctcatttgaatcccacaatg 18909329  T
Q  337 ctcgagggattagtct 352  Q
    ||||||||||||||||    
T  18909328 ctcgagggattagtct 18909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 233 - 378
Target Start/End: Complemental strand, 22188127 - 22187984
Alignment:
Q  233 tctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccac 332  Q
    ||||||||| |||||  |||||  | |||| |||| ||||||||||||| || ||| ||||||||||||  |||||| || ||||| |||||| ||||||    
T  22188127 tctcttctaacttaaccaaggtattgggtttgaatccagccttgggcatacaacagcgttaaaactctt--ggagagtctgccgcctatttgggtcccac 22188030  T
Q  333 aatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  22188029 aatactagagggattagtctccgcagttgcgcgcggaggatacccg 22187984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 206 - 376
Target Start/End: Complemental strand, 30785144 - 30784974
Alignment:
Q  206 aagaacatttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttaggg 305  Q
    |||| ||||||||||||||| |||  ||||||||||||||||| || ||  | ||||||||| |||| |||| |||||||||  ||||||||||||||||    
T  30785144 aagagcatttagatgagatggaacgagtctcttctagcttaatcaatgtcttgggttcgaatccagctttggacatgcagcaacgttaaaactcttaggg 30785045  T
Q  306 agagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    |||  || ||  |||||| | || ||||||  || ||||||||||||||||||||||||||||||||||||    
T  30785044 agaatctgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacc 30784974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 2798464 - 2798320
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||||||| ||| |||||||||||||  |||||||| ||||||||| || ||||| ||||||||||| ||||||||| ||||||||||| ||    
T  2798464 ttagatgagatgaaac-ggtttcttctagcttaaccaaggttctgggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagggagagctta 2798366  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagt 359  Q
    |||||||||||| | | ||||| ||| || ||||| |||| |||||    
T  2798365 ccgcccatttggtttctacaatgctctagagattaatctctgcagt 2798320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 2804631 - 2804487
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||||||| ||| |||||||||||||  |||||| | ||||||||| || ||||| ||||||||||| ||||||||| ||||||||||| ||    
T  2804631 ttagatgagatgaaac-ggtttcttctagcttaaccaaggttttgggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagggagagctta 2804533  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagt 359  Q
    |||||||||||| | | ||||| ||| || ||||| |||| |||||    
T  2804532 ccgcccatttggtttctacaatgctctagagattaatctctgcagt 2804487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 213 - 375
Target Start/End: Original strand, 12682625 - 12682787
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||| ||||||||||||  ||||||||||||||||  || |||||  |||||||| |||||||| ||||||| ||  |||||||||||| |||||| | |    
T  12682625 tttaaatgagatgaaacgagtctcttctagcttaagcaatgttctgagttcgaatccagccttgagcatgcaacaacgttaaaactcttcgggagaactt 12682724  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatac 375  Q
      ||  || ||| ||||||| ||| |||||| |||||||| ||||||||||||||||||||||    
T  12682725 gtcgttcaattgaatcccaccatattcgaggaattagtcttcgcagttgcgcgcggaggatac 12682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 260 - 381
Target Start/End: Original strand, 35774622 - 35774743
Alignment:
Q  260 gttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagt 359  Q
    ||||||||| |||||||| |||||| || ||||||||| |||||||||||| | |||| ||||||  || |||||||||||| | |||| ||||| ||||    
T  35774622 gttcgaatttagccttggacatgcaacaatgttaaaacacttagggagagcttgccgcacatttgagtctcacaatactcgatgaattaatctcctcagt 35774721  T
Q  360 tgcgcgcggaggatacccgatt 381  Q
    ||| |||||| |||||||||||    
T  35774722 tgcacgcggaagatacccgatt 35774743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 36212962 - 36213033
Alignment:
Q  289 tgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagtt 360  Q
    |||||||||||||||||||||  | |||||||||| | ||||||||| ||||||||||| ||||||||||||    
T  36212962 tgttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 374
Target Start/End: Complemental strand, 10795466 - 10795308
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    ||||||||||||| || | |||||||  ||||||  ||||| ||| |||| ||| ||||||| |||||| |||||  |||||||||| | |||||   |     
T  10795466 ttagatgagatgatacggatctcttc--gcttaaccaaggtcctaagttcaaatccagccttaggcatgaagcagcattaaaactctaaaggagaatgtg 10795369  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
    |||||||||||| |||||||| | | ||||||||||| | || ||||||||| ||||||||    
T  10795368 ccgcccatttgggtcccacaaaatttgagggattagtgttcgtagttgcgcgtggaggata 10795308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 18244619 - 18244723
Alignment:
Q  258 aggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgca 357  Q
    ||||| |||||||| ||||  ||||||||||  ||||||||||| ||||||   | || ||||||||| | |||||||||| ||| ||||||||||||||    
T  18244619 aggtttgaattcagtcttgaacatgcagcagcattaaaactctttgggagatttttccacccatttgggttccacaatacttgagagattagtctccgca 18244718  T
Q  358 gttgc 362  Q
    |||||    
T  18244719 gttgc 18244723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 300 - 378
Target Start/End: Original strand, 25983742 - 25983820
Alignment:
Q  300 ttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    ||||||||||| | |||||||||||  ||||| |||  ||||| ||||||||||||||||||| | |||||||||||||    
T  25983742 ttagggagagcttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccg 25983820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 28023593 - 28023495
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||||||||||| ||| | |||||||||||||||  || || ||  |||||||| ||||||| |||||  || |||||||||||| |||||||||||||    
T  28023593 ttagatgagatggaacggatctcttctagcttaaccaatgtcctgagttcgaatccagccttaggcatatagtagtgttaaaacttttagggagagcct 28023495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 41446736 - 41446654
Alignment:
Q  280 atgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgc 362  Q
    |||||| | ||||||||||||||  |||||  |||||| ||||||| |||||||| ||||||| ||||||||||||| |||||    
T  41446736 atgcagtaatgttaaaactcttacagagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgctgttgc 41446654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 377
Target Start/End: Original strand, 29553606 - 29553693
Alignment:
Q  290 gttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggataccc 377  Q
    ||||||||||||||||||||  |  || |||||||| ||||| ||| ||| || |||||||||| ||||||| ||| |||||||||||    
T  29553606 gttaaaactcttagggagagtttgtcgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggataccc 29553693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 35914431 - 35914581
Alignment:
Q  232 gtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccca 331  Q
    |||||||||| |||||| |||||||||| ||||||| || | ||||||||||| ||  ||| | ||||||||||||||  | || |||||||  ||||||    
T  35914431 gtctcttctaacttaatcaaggttctagattcgaatccaacattgggcatgcaacaacgtt-acactcttagggagagttttccacccatttaaatccca 35914529  T
Q  332 caatactcgagggattagtctccgc-agttgcgcgcggaggatacccgattt 382  Q
    |||  |||||| ||||| ||||  | | |||| |||||||||||| ||||||    
T  35914530 caagcctcgagtgattaatctctacaaattgcacgcggaggatactcgattt 35914581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 41434011 - 41433940
Alignment:
Q  291 ttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgc 362  Q
    ||||||||||||  |||||  |||||| ||||| | |||||||| ||||||| |||||||||||||||||||    
T  41434011 ttaaaactcttacagagagtttaccgctcatttaggtcccacaagactcgagagattagtctccgcagttgc 41433940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 3526003 - 3525864
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    ||||||||||||| ||| ||||||||||| ||||  ||| ||||| |||||||| ||  ||| | |||||| || |||||||||| ||||||||||  |     
T  3526003 ttagatgagatgacacatgtctcttctagtttaaccaagattcta-gttcgaatccactcttagacatgcaacattgttaaaacttttagggagagtttg 3525905  T
Q  314 ccgcccatttgga-tcccacaatactcgagggattagtctc 353  Q
    ||||| |||| || |||||||| |||   ||||||||||||    
T  3525904 ccgcctatttagattcccacaagactaaggggattagtctc 3525864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 32313180 - 32313105
Alignment:
Q  290 gttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcg 365  Q
    ||||||||||||| ||||||  | | ||||||||   ||| |||||||||||||||||||||||  ||||||||||    
T  32313180 gttaaaactcttaaggagagtttgctgcccatttaagtcctacaatactcgagggattagtctctacagttgcgcg 32313105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 373787 - 373746
Alignment:
Q  341 agggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||| ||||||||||||||| |||||||||||| ||||    
T  373787 agggattaatctccgcagttgcgcacggaggatacccaattt 373746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 2760310 - 2760347
Alignment:
Q  327 tcccacaatactcgagggattagtctccgcagttgcgc 364  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  2760310 tcccacaagactcgagggattagtctctgcagttgcgc 2760347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 38951789 - 38951921
Alignment:
Q  250 aaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattag 349  Q
    ||||| || ||||| |||||| | ||||||||||| ||   |||||| ||| ||||||||| ||||| | |||| | ||||||||| || ||| ||||||    
T  38951789 aaggtccttggttcaaattcaactttgggcatgcatcaaccttaaaattctaagggagagcttaccgtcaatttaggtcccacaatgcttgagagattag 38951888  T
Q  350 tctccgcagttgcgcgcggaggatacccgattt 382  Q
      | | ||||| | ||| |||||||||||||||    
T  38951889 catacacagttacacgcagaggatacccgattt 38951921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 214 - 378
Target Start/End: Complemental strand, 31307216 - 31307052
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| |||||||||||||||||  ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  31307216 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 31307117  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31307116 ccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 31307052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 38766080 - 38766248
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| |||  ||||||||||||||||  ||||| || |||| |||| |||||||||||||||||||| |||||||||||||||||||| ||     
T  38766080 ttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggtttgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtctg 38766179  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38766180 ccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 38766248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 213 - 374
Target Start/End: Complemental strand, 35334249 - 35334088
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||| |||| ||||||||||||||||  |||||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||| |     
T  35334249 tttagatgagatggaacaagtctcttctagcttaaccaaggttcttggttcgtattcagccttgggcatgcagcagagttaaaactcttagagagagtcc 35334150  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  35334149 gccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggata 35334088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 14854596 - 14854760
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| | |||||||||||||||  |||||||| ||||||||| |||||||||||||||||||  ||||||||||||||||||||| |     
T  14854596 ttagatgagatggaacggttctcttctagcttaaccaaggttctgggttcgaatccagccttgggcatgcagcatcgttaaaactcttagggagagcttg 14854695  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  14854696 ccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacccg 14854760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 231 - 382
Target Start/End: Original strand, 46016154 - 46016308
Alignment:
Q  231 ggtctcttctagcttaattaag---gttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggat 327  Q
    |||||||||||||||||  |||   || || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  46016154 ggtctcttctagcttaaccaagtaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggt 46016253  T
Q  328 cccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||| ||||| | ||||||||||| ||||||||| ||||||||||||||||    
T  46016254 cccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgattt 46016308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 259 - 382
Target Start/End: Original strand, 9012306 - 9012429
Alignment:
Q  259 ggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcag 358  Q
    |||||||||  ||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||| ||||||||| ||||||||||||||||||||||    
T  9012306 ggttcgaatctagccttgggcatgcagcagtgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcag 9012405  T
Q  359 ttgcgcgcggaggatacccgattt 382  Q
    ||||||||||||||||||||||||    
T  9012406 ttgcgcgcggaggatacccgattt 9012429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 213 - 377
Target Start/End: Original strand, 45994512 - 45994676
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||| |||||||||||||||||||||  ||||| || | ||||||| |||||||||||||||| ||  |||||||||||||||||||||||    
T  45994512 tttagatgagatggaacaggtctcttctagcttaaccaaggtcctggattcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcct 45994611  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggataccc 377  Q
      ||||||||||| || |||||| |||||| ||||||||||||||||||| |||  |||||||||    
T  45994612 gacgcccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggataccc 45994676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 260 - 382
Target Start/End: Complemental strand, 51626410 - 51626288
Alignment:
Q  260 gttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagt 359  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||| || ||| |||||||| ||||||| | |||||| ||||||||||||||||    
T  51626410 gttcgaatccagccttgggcatgcagcagtgttaaaacttttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcagt 51626311  T
Q  360 tgcgcgcggaggatacccgattt 382  Q
    |||||||||||||||||||||||    
T  51626310 tgcgcgcggaggatacccgattt 51626288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 259 - 369
Target Start/End: Complemental strand, 13948697 - 13948587
Alignment:
Q  259 ggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcag 358  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||| |||||| ||||||||||||||||| ||||    
T  13948697 ggttcgaatccagccttgggtatgcagcagtgttaaaactcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctctgcag 13948598  T
Q  359 ttgcgcgcgga 369  Q
    |||||||||||    
T  13948597 ttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 214 - 376
Target Start/End: Original strand, 35972334 - 35972496
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| || ||||||||||||||  |||||  | ||||||||| ||||| ||||||| |||||| ||||||||| ||||||||||  |     
T  35972334 ttagatgagatggaacgggcctcttctagcttaaccaaggtcttgggttcgaatccagccatgggcatacagcagcgttaaaactattagggagagtttg 35972433  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    |||||||||||| |||||| ||  |||||||||||||||||||||||||| ||||||||||||    
T  35972434 ccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacc 35972496  T

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Target: chr4; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 251 - 374
Target Start/End: Complemental strand, 46250668 - 46250545
Alignment:
Q  251 aggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagt 350  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||| || ||||| | ||||||    
T  46250668 aggtcctaggttcgaatccagtcttgggcatgcagcagtgttaaaactcttatggaaagcctgccgcccatttgggtcccacgatgctcgaagaattagt 46250569  T
Q  351 ctccgcagttgcgcgcggaggata 374  Q
    |||||| |||| ||| ||||||||    
T  46250568 ctccgcggttgtgcgtggaggata 46250545  T

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Target: chr4; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 7096087 - 7096254
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    ||||||||||||| |||||| |||||||||||||  |||||| | |||| |||| ||| |||| | ||||||||  ||||||||||||||||||||| ||    
T  7096087 ttagatgagatgacacaggtttcttctagcttaaccaaggttttgggtttgaatacagtcttgagtatgcagcaaagttaaaactcttagggagagctta 7096186  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||| | ||  ||||| ||| || ||||||||| | ||||||| |||||| ||||||||||||    
T  7096187 ccgcccatttaggtcttacaatgctcaagagattagtctgcacagttgcacgcgga-gatacccgattt 7096254  T

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Target: chr4; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 374
Target Start/End: Original strand, 17135092 - 17135247
Alignment:
Q  218 atgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgc 317  Q
    ||||||||| ||  ||||||||||||||||| || || |||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||  | ||||    
T  17135092 atgagatgacacgtgtctcttctagcttaatcaaagtcctag-ttcgaatccagccttgtgcatgcagcagcgttaaaactcttagggagagtttgccgc 17135190  T
Q  318 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
     ||||||  ||||| || ||||||||||||||||||   |||||||| |||||||||    
T  17135191 gcatttgagtcccagaagactcgagggattagtctcaaaagttgcgcacggaggata 17135247  T

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Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 33529325 - 33529409
Alignment:
Q  291 ttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatac 375  Q
    |||||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  33529325 ttaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatac 33529409  T

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Target: chr4; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 217 - 378
Target Start/End: Complemental strand, 32005298 - 32005132
Alignment:
Q  217 gatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcag-----cagtgttaaaactcttagggagagcc 311  Q
    ||||||||| || |||||||||||| |||||  || || ||  ||||||||||||| |||||||||||      |||||||||||||||||||||||| |    
T  32005298 gatgagatggaataggtctcttctaacttaaccaaagtcctgagttcgaattcagctttgggcatgcattgcatcagtgttaaaactcttagggagagtc 32005199  T
Q  312 taccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    | ||||| |||| |||| || ||| |||||| |||||||||||||| ||  ||||||||||||||||    
T  32005198 tgccgcctatttagatctcaaaatgctcgagagattagtctccgcaattatgcgcggaggatacccg 32005132  T

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Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 218 - 378
Target Start/End: Complemental strand, 38844314 - 38844154
Alignment:
Q  218 atgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgc 317  Q
    |||||||| |||  ||||||||||||||||  |||||  |  |||||||| |||| ||||||||||| ||| ||||||||||||||| |||| || ||||    
T  38844314 atgagatggaacgagtctcttctagcttaaccaaggtcatgagttcgaatccagctttgggcatgcaacagcgttaaaactcttaggaagagtctgccgc 38844215  T
Q  318 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||   |||||||| |||||| ||||||||||  | ||| ||||| |||||||||||    
T  38844214 ccatttgacccccacaatgctcgagagattagtctctactgttacgcgcagaggatacccg 38844154  T

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Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 372
Target Start/End: Complemental strand, 56447273 - 56447115
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||||| ||||||  || ||| |||||||| ||||  || || |||||||||||| ||||  |||||||||||||||||||||||||||||||||||  |    
T  56447273 tttagaagagatgtcacgggtttcttctagtttaaccaaagtcctaggttcgaatccagctatgggcatgcagcagtgttaaaactcttagggagagttt 56447174  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggagga 372  Q
     |  ||||||||||| |||||| ||| ||||||||| |||  ||| |||||||| |||||    
T  56447173 gctacccatttggat-ccacaagacttgagggattaatctatgcaattgcgcgcagagga 56447115  T

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Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 362
Target Start/End: Original strand, 13686592 - 13686741
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactctt-agggagagcct 312  Q
    ||||||||||||  |  |||||||||| ||||||  ||||| || ||||||||| || |||||||| |||||||| |||||||||||| ||||||||  |    
T  13686592 ttagatgagatggcatgggtctcttcttgcttaaccaaggtcctgggttcgaatccatccttgggcgtgcagcagcgttaaaactcttaagggagagttt 13686691  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgc 362  Q
     ||| |||||||| || |||||  |||||| ||||||||||| |||||||    
T  13686692 gccgtccatttgggtctcacaaggctcgagagattagtctccacagttgc 13686741  T

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Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 3649137 - 3649057
Alignment:
Q  273 cttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctc 353  Q
    |||||||||||| ||  ||||||||||||||||||||  | |||| |||||||||| ||||| |||||| |||||||||||    
T  3649137 cttgggcatgcaacaacgttaaaactcttagggagagttttccgctcatttggatcgcacaagactcgaaggattagtctc 3649057  T

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Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 11140469 - 11140540
Alignment:
Q  235 tcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttaggga 306  Q
    |||||||||||||  ||||| || | ||||||| ||||||||||||||||||||  ||||||||||||||||    
T  11140469 tcttctagcttaaccaaggtcctggtttcgaatccagccttgggcatgcagcagctttaaaactcttaggga 11140540  T

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Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 355
Target Start/End: Original strand, 51853707 - 51853828
Alignment:
Q  232 gtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccca 331  Q
    |||||||||| |||||  || ||||| ||||||||||||||||||||||||||||    |||||||||||| ||| ||  | | | |||||| | || ||    
T  51853707 gtctcttctaacttaaccaaagttct-ggttcgaattcagccttgggcatgcagcttccttaaaactctta-ggaaagtttgcggtccattttggtctca 51853804  T
Q  332 caatactcgagggattagtctccg 355  Q
    ||||||||||||||||||||||||    
T  51853805 caatactcgagggattagtctccg 51853828  T

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Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 14042859 - 14042984
Alignment:
Q  253 gttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtct 352  Q
    ||||| |||||||||  || |||||||||||||| | ||| |||||||| |||||| | |  || |||||||||| ||||||| ||| ||||||| ||||    
T  14042859 gttctgggttcgaatcaagtcttgggcatgcagccgcgtttaaactcttggggagaacatgtcgtccatttggattccacaatgctcaagggatttgtct 14042958  T
Q  353 ccgcagttgcgcgcggaggatacccg 378  Q
    |||  ||| ||||| |||||| ||||    
T  14042959 ccgtggttacgcgcagaggatgcccg 14042984  T

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Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 15133473 - 15133528
Alignment:
Q  321 tttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    ||||| |||||||||  | ||| |||||||||||||||||||||||||||||||||    
T  15133473 tttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

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Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 376
Target Start/End: Original strand, 18841556 - 18841639
Alignment:
Q  294 aaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgc-agttgcgcgcggaggatacc 376  Q
    ||||||||||| ||||  | ||||| |||||||||| ||||  ||| |||||||||||||||| |||||||| |||||||||||    
T  18841556 aaactcttaggtagagtttgccgccaatttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacc 18841639  T

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Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 22189538 - 22189399
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    ||||||||||||| |   ||||||||||||||||  ||||| |   |||||||| || ||||| ||||||||||   |||||||||||||| ||||  |     
T  22189538 ttagatgagatgacatgagtctcttctagcttaaccaaggtccagagttcgaatccaaccttgtgcatgcagcaacattaaaactcttaggtagagattg 22189439  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctc 353  Q
    ||||| || ||| ||||||||  ||||||| |||||||||    
T  22189438 ccgcctatatgggtcccacaaggctcgaggaattagtctc 22189399  T

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Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 353
Target Start/End: Original strand, 47023429 - 47023532
Alignment:
Q  250 aaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattag 349  Q
    ||||| || ||||| ||| ||| ||| |||||||| ||  ||||||||||||||||||||  |  || |||||||| |||||||| |||||| |||||||    
T  47023429 aaggtccttggttccaatccagacttaggcatgcaacaaagttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggattag 47023528  T
Q  350 tctc 353  Q
    ||||    
T  47023529 tctc 47023532  T

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Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 3976641 - 3976713
Alignment:
Q  290 gttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgc 362  Q
    ||||||||| |||||||||   ||||||||||||||||||||||| |||||  ||||| ||||| ||| ||||    
T  3976641 gttaaaacttttagggagattttaccgcccatttggatcccacaagactcgtaggattggtctctgcaattgc 3976713  T

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Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 382
Target Start/End: Complemental strand, 37241394 - 37241358
Alignment:
Q  346 ttagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||||||||||||||||||||||||||| |||||    
T  37241394 ttagtctccgcagttgcgcgcggaggatacctgattt 37241358  T

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Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 382
Target Start/End: Original strand, 16994158 - 16994251
Alignment:
Q  291 ttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttg--cgcgcggaggatacccgattt 382  Q
    |||||||||| | ||||||  | | |||||||| | | |||||| ||||||| ||||||||||||||||||  || || |||||||||||||||    
T  16994158 ttaaaactctaaaggagagtttgctgcccatttaggttccacaagactcgagtgattagtctccgcagttgcacgtgcagaggatacccgattt 16994251  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 28408537 - 28408619
Alignment:
Q  273 cttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccg 355  Q
    ||||||| |||||||  ||||||| ||||| ||||||  | ||||||||||||||| ||||| ||||||| || |||| ||||    
T  28408537 cttgggcgtgcagcatcgttaaaattcttatggagagtttgccgcccatttggatctcacaagactcgagagaatagtttccg 28408619  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 56425897 - 56425970
Alignment:
Q  231 ggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagg 304  Q
    |||||||| | ||||||||||||| ||| ||| |||||||||||| ||||||  ||||  |||||||| |||||    
T  56425897 ggtctctttttgcttaattaaggtcctaagtttgaattcagccttaggcatgtcgcagcattaaaactgttagg 56425970  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 22017525 - 22017605
Alignment:
Q  284 agcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgc 364  Q
    |||||||||||||| |||||||| ||| | ||||| ||||| ||| ||||||  ||||| ||||| ||||  |||||||||    
T  22017525 agcagtgttaaaacccttagggaaagcttgccgcctatttgaatcacacaatgatcgagcgattaatctctacagttgcgc 22017605  T

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Target: chr7 (Bit Score: 121; Significance: 9e-62; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 29059796 - 29059960
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| |||||||||||||||||  ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  29059796 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 29059895  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  29059896 ccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccg 29059960  T

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Target: chr7; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 217 - 378
Target Start/End: Original strand, 31492097 - 31492258
Alignment:
Q  217 gatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccg 316  Q
    ||||||||| ||| |||||||||||||||||  ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  31492097 gatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccg 31492196  T
Q  317 cccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31492197 cccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 31492258  T

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Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 214 - 382
Target Start/End: Complemental strand, 8839431 - 8839262
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||||||| |||||||||||||||||  ||||| || ||||||||| |||||||||||||||||||| |||||||||||||||||||  ||     
T  8839431 ttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagaatctg 8839332  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcg--cgcggaggatacccgattt 382  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||||||    
T  8839331 ccgcctatttagatcccacaatactcgagggattagtctccgcaattgcgcacgcgga-gatacccgattt 8839262  T

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Target: chr7; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 213 - 365
Target Start/End: Complemental strand, 19477400 - 19477249
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||| ||| |||||||||||||||||  |||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||| |    
T  19477400 tttagatgagatggaacgggtctcttctagcttaaccaaggttctgggtttgaatccagccttgggcatgcaacagtgttaaaactcttagggagagctt 19477301  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcg 365  Q
     ||| |||||||| ||||||||| || ||||||||||||||||||||||||||    
T  19477300 gccggccatttgggtcccacaatgct-gagggattagtctccgcagttgcgcg 19477249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 213 - 376
Target Start/End: Complemental strand, 21747190 - 21747028
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||| ||| ||||||||||| |||||  ||||| || ||| ||||| |||| || ||||||| |||| |||||||||||||||||||||||    
T  21747190 tttagatgagatggaacgggtctcttctaacttaaccaaggtcctgggt-cgaatccagctttaggcatgctgcagcgttaaaactcttagggagagcct 21747092  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    ||| ||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  21747091 accacccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacc 21747028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 28537381 - 28537541
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| ||||||||||| |||||| |||||| | ||||||||| |||||||||||||||| ||  |||||||||||||||||||||||     
T  28537381 ttagatgagatggaacgggtctcttctaacttaatcaaggttttgggttcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctg 28537480  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||||| |||    || || ||||||||||||||||||||||| |||| ||||||||||    
T  28537481 ccgcccatttgggtcc----atgcttgagggattagtctccgcagttgcacgcgaaggatacccg 28537541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 214 - 348
Target Start/End: Complemental strand, 13254251 - 13254117
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| |||||||||||||||||  ||||| ||  |||||||| ||||||| |||||||||||| ||| |||||||||||||||||||     
T  13254251 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgcagcagcgttgaaactcttagggagagcctg 13254152  T
Q  314 ccgcccatttggatcccacaatactcgagggatta 348  Q
    |||||||||| | ||||||||| ||||||||||||    
T  13254151 ccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 214 - 375
Target Start/End: Original strand, 20207489 - 20207649
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    ||||||||||||| |  | | ||||||||||||| |||| || | ||||| ||||||||||| |||||| | ||  ||||||||||||| ||||||| |     
T  20207489 ttagatgagatgatatggatttcttctagcttaactaagatt-tgggttctaattcagccttaggcatgtaacaacgttaaaactcttaaggagagcttg 20207587  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatac 375  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||    
T  20207588 ccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatac 20207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 213 - 378
Target Start/End: Original strand, 35707837 - 35708001
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||| ||||  |||||||||||||||| ||||  |||||||| ||||||||| || | |||| |||||| ||  ||||||| ||||||||||| | |    
T  35707837 tttagattagattgaacaggtctcttctagtttaaccaaggttct-ggttcgaatccaactttggacatgcaacaacgttaaaattcttagggagaactt 35707935  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
     || ||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  35707936 gcctcccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccg 35708001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 213 - 382
Target Start/End: Complemental strand, 42741963 - 42741791
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaat-tcagccttgggcat----gcagcagtgttaaaactcttagggag 307  Q
    ||||||||||||| ||||||||||||||| |||||  || || |||||||||||| | || ||  | |||    ||||||||||||||||| ||||||||    
T  42741963 tttagatgagatggaacaggtctcttctatcttaaccaatgtcctaggttcgaatattagtctccg-catttgcgcagcagtgttaaaacttttagggag 42741865  T
Q  308 agcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    | ||| || ||||||||| ||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  42741864 aacctgccacccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacccgattt 42741791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 46373664 - 46373834
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||||  | |||||||||||||||||  ||| | || ||||||||| ||| ||||||||| || ||  |||||||||| |||||||||| |     
T  46373664 ttagatgagatgacgcgggtctcttctagcttaagcaagatcctgggttcgaatccagtcttgggcatacaacatcgttaaaactcgtagggagagcttg 46373763  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagtt--gcgcgcggaggatacccgattt 382  Q
    ||||| |||||| || |||||| |||||| |||||||||  ||||||  ||||||||| ||||||||||||    
T  46373764 ccgcctatttgggtcacacaatgctcgagagattagtcttggcagtttcgcgcgcggaagatacccgattt 46373834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 378
Target Start/End: Complemental strand, 11486839 - 11486730
Alignment:
Q  269 cagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgg 368  Q
    |||||||||||||||| | ||||||||||||||| | ||||| | |||||||||||| | ||||||| ||| || ||||||||||  |||||||||||||    
T  11486839 cagccttgggcatgcatctgtgttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcgg 11486740  T
Q  369 aggatacccg 378  Q
    ||||||||||    
T  11486739 aggatacccg 11486730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 37339803 - 37339715
Alignment:
Q  294 aaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||| ||||| || ||||| |||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  37339803 aaactcttagtgagagtctgccgcctatttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgattt 37339715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 378
Target Start/End: Original strand, 24172243 - 24172364
Alignment:
Q  259 ggttcgaattcagccttgggcatgcagcagtgttaaaactct--tagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgc 356  Q
    ||||||||| || ||||||||||||| ||  |||||||||||  ||| |||||| | ||||||| |||||||||||||| ||||| ||||||||||  ||    
T  24172243 ggttcgaatccaaccttgggcatgcaacaacgttaaaactctcttagtgagagcttgccgcccacttggatcccacaatgctcgaaggattagtctatgc 24172342  T
Q  357 agttgcgcgcggaggatacccg 378  Q
    |||||||||||||| |||||||    
T  24172343 agttgcgcgcggagtatacccg 24172364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 352
Target Start/End: Complemental strand, 7265464 - 7265325
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||| ||||||||| || |||||||||||||||||  || ||| | |||||| ||  || ||||||||||||||  |||||||||||||||||||||  |    
T  7265464 tttatatgagatgacacgggtctcttctagcttaaccaaagttttgggttcggatctagtcttgggcatgcagcgatgttaaaactcttagggagagttt 7265365  T
Q  313 accgcccatttggatcccacaatactcgagggattagtct 352  Q
     | || ||||||| |||||||||||||||  |||||||||    
T  7265364 gctgctcatttgggtcccacaatactcgaatgattagtct 7265325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 14545000 - 14545070
Alignment:
Q  280 atgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagt 350  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||| ||||||||    
T  14545000 atgcagcagtgttaaaactcttagggagagcctgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 24579584 - 24579434
Alignment:
Q  232 gtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccca 331  Q
    ||||||||||| ||||  ||||||||  ||||||||||||| ||  |||||||||| || |||||| |||||||||||  | ||| |||||||||||| |    
T  24579584 gtctcttctagtttaaccaaggttctgagttcgaattcagctttacgcatgcagcattgataaaacacttagggagag--tgccgtccatttggatccta 24579487  T
Q  332 caatactcgagggattagtctccgcagttgc--gcgcggaggatacccgattt 382  Q
     || ||||||| |||||||||| ||||||||   | |||||||||||||||||    
T  24579486 gaagactcgagagattagtctctgcagttgcatacacggaggatacccgattt 24579434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 31776494 - 31776571
Alignment:
Q  299 cttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    |||||||||||||  | |||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  31776494 cttagggagagccagctgcccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacc 31776571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 40099422 - 40099302
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| ||||||||||||||||| |||| | ||   ||||||| |||| ||||  |||||||||  |||||||||||||||||||| |     
T  40099422 ttagatgagatggaacgggtctcttctagcttaactaagatcctgaattcgaatccagctttggatatgcagcagcattaaaactcttagggagagcttg 40099323  T
Q  314 ccgcccatttggatcccacaa 334  Q
    |||||||||||  ||||||||    
T  40099322 ccgcccatttgagtcccacaa 40099302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 355
Target Start/End: Complemental strand, 27484200 - 27484058
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||||||||||||| ||| ||||||||||||||||  ||||| ||  |||  ||| ||||| |||||||||||||| |||||||||||| |||||||| |    
T  27484200 tttagatgagatgacacaagtctcttctagcttaaccaaggtcctgagtttaaatccagccatgggcatgcagcagcgttaaaactcttggggagagctt 27484101  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccg 355  Q
     ||  | |||||| || ||| || || ||||||||| ||||||    
T  27484100 tccatcgatttgggtctcacgatgcttgagggattaatctccg 27484058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 318
Target Start/End: Complemental strand, 7190510 - 7190405
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||| || |  |||||||||||||||  |||||| |  ||| ||||||||| ||||||||||||| ||||||||||| ||||||||| | |    
T  7190510 tttagatgagatggaataaatctcttctagcttaaccaaggttatgagtttgaattcagcattgggcatgcagccgtgttaaaacttttagggagaactt 7190411  T
Q  313 accgcc 318  Q
    ||||||    
T  7190410 accgcc 7190405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 2657986 - 2657888
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||||||||||| |||  |||||||||| |||||| ||||  ||  |||| ||| |||||||||||||||||||  ||||||||||||| |||||||||    
T  2657986 ttagatgagatggaacgagtctcttctaacttaatcaaggccctgagttcaaatacagccttgggcatgcagcaacgttaaaactcttaaggagagcct 2657888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 28665194 - 28665244
Alignment:
Q  327 tcccacaatactcgagggattagtctccgcagttgcgcgcggaggataccc 377  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  28665194 tcccacaatgctcgagggattagtctccgcagttgcacgcggaggataccc 28665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 28828897 - 28828756
Alignment:
Q  232 gtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccca 331  Q
    |||||||||||||||| |||  || |||||||||||||| | ||   |||| ||||| ||||||||||| || |||||  || || |||||||| || ||    
T  28828897 gtctcttctagcttaactaatattttaggttcgaattcaactttaaacatgtagcagcgttaaaactctcagagagagtttatcgtccatttgggtctca 28828798  T
Q  332 caatactcgagggattagtctccgcagttgcgcgcggaggat 373  Q
    |||  ||| | |||||||||| ||||||||| ||||||||||    
T  28828797 caaggctcaatggattagtctgcgcagttgctcgcggaggat 28828756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 29428857 - 29428792
Alignment:
Q  299 cttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgc 364  Q
    |||||||||||  | ||| ||||||||||||||||||  |||||||||||||||| ||||||||||    
T  29428857 cttagggagagtttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttgcgc 29428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 23933772 - 23933633
Alignment:
Q  243 cttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgag 342  Q
    ||||| |||||| || ||||||||| ||| |||| || ||||  ||  |||||||| ||||||||||  | |||||||||| | | | |||||||| |||    
T  23933772 cttaactaaggtcctgggttcgaatccagtcttgagcttgcaagagcattaaaacttttagggagagtttgccgcccatttaggttcgacaatacttgag 23933673  T
Q  343 ggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||||||| ||| |||| | | |||||||||| ||||    
T  23933672 ggattagtctctgcaattgcacacagaggatacccaattt 23933633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 352
Target Start/End: Complemental strand, 4059842 - 4059705
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||| |||| ||| ||||||| ||| ||||  ||||| ||  |||||||| |||||||| ||||||| ||  |||||||||||||| |||||  |     
T  4059842 ttagatgacatgacacatgtctcttttagtttaaccaaggt-ctgagttcgaatacagccttgagcatgcaacatcgttaaaactcttagagagagtttt 4059744  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtct 352  Q
    |||   |||||| || ||||| |||||||||||||||||    
T  4059743 ccgtttatttgggtcacacaagactcgagggattagtct 4059705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 45778971 - 45779017
Alignment:
Q  330 cacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||    
T  45778971 cacaatactcgagggattagtctccgcagttgcgaatggaggatacc 45779017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 36821113 - 36821069
Alignment:
Q  331 acaatactcgagggattagtctccgcagttgcgcgcggaggatac 375  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatac 36821069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 1424669 - 1424716
Alignment:
Q  319 catttggatcccacaatactcgagggattagtctccgcagttgcgcgc 366  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||||    
T  1424669 catttgggtcccacaagacttgagagattagtctccgcagttgcgcgc 1424716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 382
Target Start/End: Complemental strand, 25241198 - 25241107
Alignment:
Q  291 ttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||| ||||||||||  |  |||||||||  ||| ||||| ||||||| ||||||||||| || ||||||||| || |||| ||||||    
T  25241198 ttaaaacttttagggagagtttgtcgcccatttaaatctcacaagactcgagagattagtctccacatttgcgcgcgaagcatactcgattt 25241107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 2371139 - 2371224
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactc 299  Q
    ||||||||||||| || | |||||||||| || | |||||| ||   ||||||||||| ||| || ||||||||| ||||||||||    
T  2371139 ttagatgagatgacacggttctcttctagattgactaaggtcctgaattcgaattcaggcttaggaatgcagcagcgttaaaactc 2371224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 14552482 - 14552515
Alignment:
Q  345 attagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||||||||||||||| |||||||||||    
T  14552482 attagtctccgcagttgcgcgcagaggatacccg 14552515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 32469986 - 32470069
Alignment:
Q  293 aaaactcttagggagagcctaccgcccatttggatcccacaata--ctcgagggattagtctccgcagttgcgcgcggaggata 374  Q
    |||||| ||||||||| | | ||| |||||||| || |||||||  |||||| ||||||| | ||||||||| |||||||||||    
T  32469986 aaaacttttagggagaacttgccgtccatttgggtctcacaatatgctcgagagattagtgttcgcagttgcacgcggaggata 32470069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 206 - 378
Target Start/End: Original strand, 2743916 - 2744088
Alignment:
Q  206 aagaacatttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttaggg 305  Q
    |||| ||||||||||||||| ||| |||||||||||||||||  ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  2743916 aagagcatttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttaggg 2744015  T
Q  306 agagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    ||||| |  || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2744016 agagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 2744088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 214 - 382
Target Start/End: Complemental strand, 4125174 - 4125006
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| |||||||||||||||||  || || || |||||||||  |||||||||||||||||| ||||||||||||||||||||||||     
T  4125174 ttagatgagatggaacgggtctcttctagcttaaccaatgtcctgggttcgaatcaagccttgggcatgcagcactgttaaaactcttagggagagcctg 4125075  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4125074 ccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 4125006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 214 - 376
Target Start/End: Complemental strand, 19715876 - 19715713
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| |||| |||| |||||||||||  ||||| || ||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |     
T  19715876 ttagatgagatggaacatgtcttttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactctcagggagagcttg 19715777  T
Q  314 ccgcccatttggatcccacaatactcga-gggattagtctccgcagttgcgcgcggaggatacc 376  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  19715776 ccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacc 19715713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 214 - 378
Target Start/End: Complemental strand, 13468895 - 13468731
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||| ||||| ||| |||||||||||||||||  ||||| || ||||||||| |||||||||||||| ||||| |||||||||||||| ||||| ||     
T  13468895 ttagattagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgtagcagcgttaaaactcttagagagagtctg 13468796  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||||  ||||||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  13468795 ccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccg 13468731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 214 - 372
Target Start/End: Complemental strand, 12958235 - 12958077
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| |||  ||||||||||||||||  |||||  | |||| |||| |||| ||||||||||||||| |||||||||||||||||||||||     
T  12958235 ttagatgagatggaactagtctcttctagcttaaccaaggtcatgggtttgaatccagcattgggcatgcagcagcgttaaaactcttagggagagcctg 12958136  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggagga 372  Q
     ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  12958135 tcgcccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 30935995 - 30936159
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| ||||||||||| |||||  ||||| ||  |||||||| |||||||  ||||||||||  |||||||||||||||||||||||     
T  30935995 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagccttaagcatgcagcaacgttaaaactcttagggagagcctg 30936094  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||||| ||| |||||  |||||||||||||||||||||||||||||||| | ||||||    
T  30936095 ccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcggatgttacccg 30936159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 7839343 - 7839239
Alignment:
Q  274 ttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggat 373  Q
    |||||||||||||||  |||||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7839343 ttgggcatgcagcagctttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggat 7839244  T
Q  374 acccg 378  Q
    |||||    
T  7839243 acccg 7839239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 232 - 353
Target Start/End: Original strand, 15682938 - 15683059
Alignment:
Q  232 gtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccca 331  Q
    ||||||||||||||||| ||||| ||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||    
T  15682938 gtctcttctagcttaatcaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttaggtccca 15683037  T
Q  332 caatactcgagggattagtctc 353  Q
    |||| |||||||||||| ||||    
T  15683038 caatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 213 - 374
Target Start/End: Complemental strand, 30056152 - 30055991
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||| |||| ||||||||||||||||  |||||  | ||||| ||| ||||||| ||||||||||||  ||||||||||||||||||||||    
T  30056152 tttagatgagatggaacatgtctcttctagcttaacgaaggtcatgggttcaaatccagccttaggcatgcagcagcattaaaactcttagggagagcct 30056053  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
     ||| |||||||| | ||||||| |||||||||||||||||   ||||||| |||| |||||    
T  30056052 gccgtccatttgggttccacaatgctcgagggattagtctctttagttgcgtgcgggggata 30055991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 214 - 362
Target Start/End: Complemental strand, 36994650 - 36994502
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||| |||||  ||| ||||||||||| ||||  ||||| || ||||||||| ||||||||| |||||||||| ||||||||||||| ||||||  |     
T  36994650 ttagataagatggcacatgtctcttctagtttaaccaaggtcctgggttcgaatccagccttggacatgcagcagcgttaaaactcttaaggagagtttg 36994551  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgc 362  Q
    | |||||||||| ||||||||  ||||||||||||||||| ||||||||    
T  36994550 ctgcccatttgggtcccacaaggctcgagggattagtctctgcagttgc 36994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 24988522 - 24988653
Alignment:
Q  251 aggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggag-----agcctaccgcccatttggatcccacaatactcgaggga 345  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||     ||| | |||| ||||||  |||||||||||||||||||    
T  24988522 aggttctaggtttgaatccagccttgggcatgcagcagtgctaaaactcttggggaggggatagcttgccgctcatttgagtcccacaatactcgaggga 24988621  T
Q  346 ttagtctccgcagttgcgcgcggaggataccc 377  Q
    |||||||||||| ||||||   ||||||||||    
T  24988622 ttagtctccgcaattgcgcattgaggataccc 24988653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 35206991 - 35207112
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||||||||||||||||||| |||||  ||| |||| |||||||||| | |||||| |||||||||| ||||||||||||| ||| ||| |     
T  35206991 ttagatgagatgaaacaggtctcttctaacttaaccaagattctgggttcgaatttaaccttggacatgcagcagcgttaaaactcttaaggaaagcatg 35207090  T
Q  314 ccgcccatttggatcccacaat 335  Q
     || |||||||| |||||||||    
T  35207091 tcgtccatttgggtcccacaat 35207112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 357
Target Start/End: Complemental strand, 16701512 - 16701386
Alignment:
Q  231 ggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccc 330  Q
    ||||||||||| ||||| ||||||||| ||||||||| ||||||||| ||| ||| ||  ||||| |||||||||||||  |   |||||||||  ||||    
T  16701512 ggtctcttctatcttaactaaggttctgggttcgaatccagccttggacatacagtagctttaaacctcttagggagagtttgtagcccatttgagtccc 16701413  T
Q  331 acaatactcgagggattagtctccgca 357  Q
    |||| | ||||| ||||||||||||||    
T  16701412 acaagattcgagagattagtctccgca 16701386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 39086856 - 39086905
Alignment:
Q  327 tcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  39086856 tcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacc 39086905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 27121899 - 27121804
Alignment:
Q  215 tagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagc 310  Q
    |||||||||| | || |||||||||||||||||  || ||||| ||||||||| |||| ||  ||||||| ||||||||||||| ||||| |||||    
T  27121899 tagatgagataacacgggtctcttctagcttaaccaaagttctgggttcgaatccagctttaagcatgcaacagtgttaaaacttttaggaagagc 27121804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 8521791 - 8521856
Alignment:
Q  316 gcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||  ||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||    
T  8521791 gcccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgattt 8521856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 4321655 - 4321558
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagc 310  Q
    |||||||||||||| | || | ||||||||||||| ||||||||| |||| |||| ||| ||| | ||||||  |  |||||||||||||||||||||    
T  4321655 tttagatgagatgacatagatttcttctagcttaagtaaggttctgggtttgaatccagtcttagacatgcaataacgttaaaactcttagggagagc 4321558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 357
Target Start/End: Complemental strand, 23981623 - 23981478
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttaggg--agagcc 311  Q
    |||||| |||||| ||  ||||||| |||||||| || |||||| | |||||||||||| |||| ||||||| |  |||||||||||||| |  ||||      
T  23981623 ttagatcagatgacacgagtctcttttagcttaactagggttctggattcgaattcagctttggacatgcaggaacgttaaaactcttagagaaagagtt 23981524  T
Q  312 taccgcccatttggatcccacaatactcgagggattagtctccgca 357  Q
    | || ||||||||| ||  ||||  ||||||| |||||||||||||    
T  23981523 tgccacccatttgggtcgtacaaggctcgaggaattagtctccgca 23981478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 8034203 - 8034152
Alignment:
Q  290 gttaaaactcttagggagagcctaccgcccatttggatcccacaatactcga 341  Q
    ||||||||||||||||||||| | | | |||||||| |||||||||||||||    
T  8034203 gttaaaactcttagggagagcttgcagtccatttgggtcccacaatactcga 8034152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 40320193 - 40320255
Alignment:
Q  320 atttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||||||||| || |||||| |||||||||| | |||||  |||||||||||||| ||||    
T  40320193 atttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacccaattt 40320255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 32422924 - 32422811
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggca-tgcagcagtgttaaaactcttagggagagcc 311  Q
    |||||||||||||| ||| |||||||| | |||||  ||| | || |  |||||||||  |||||||| |||||||||||||||||| || ||||||       
T  32422924 tttagatgagatgacacaagtctcttcaaccttaaccaagatcctggaatcgaattcaatcttgggcaatgcagcagtgttaaaactttttgggagaaat 32422825  T
Q  312 taccgcccatttgg 325  Q
    | ||||||||||||    
T  32422824 tgccgcccatttgg 32422811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 352
Target Start/End: Original strand, 44638992 - 44639112
Alignment:
Q  232 gtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccca 331  Q
    |||||||||| |||||| ||||| ||   || |||| || ||||| ||||||| ||  ||||||||||||||||||||  | |||| ||||||   ||||    
T  44638992 gtctcttctaacttaatcaaggtcctgaatttgaatccaaccttgagcatgcaacaacgttaaaactcttagggagagtttgccgcacatttgagcccca 44639091  T
Q  332 caatactcgagggattagtct 352  Q
    ||||||| | | |||||||||    
T  44639092 caatacttgggagattagtct 44639112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 231 - 378
Target Start/End: Original strand, 26339 - 26486
Alignment:
Q  231 ggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccc 330  Q
    |||||||||||||||||  ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  26339 ggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtccc 26438  T
Q  331 acaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  26439 acaatgttcgagagattagtctccgcagttgcgcgcggaggatacccg 26486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 5394388 - 5394555
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| |||  ||||||||||||||||  ||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||     
T  5394388 ttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagca-tgttaaaactcttagggagagcctg 5394486  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||    
T  5394487 ccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgattt 5394555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 214 - 378
Target Start/End: Complemental strand, 31579379 - 31579215
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| |||||||||||||||||| |||||  | ||||||||| |||||||||||||||| ||||||||||||| |||||||||| ||     
T  31579379 ttagatgagatgtaacgggtctcttctagcttaatcaaggtcttgggttcgaatccagccttgggcatgcaacagtgttaaaacttttagggagagtctg 31579280  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    ||||||||||   ||||||||| ||||||| |||||| |||||||||||||||||||||||||||    
T  31579279 ccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccg 31579215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 214 - 378
Target Start/End: Complemental strand, 42745266 - 42745102
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| |||||||| ||||||||  |||||  | ||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||     
T  42745266 ttagatgagatggaacgggtctcttatagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaatgttaaaactcttagggagagtctg 42745167  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    | ||| |||||| | |||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  42745166 ctgcctatttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccg 42745102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 218 - 374
Target Start/End: Complemental strand, 18105508 - 18105353
Alignment:
Q  218 atgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgc 317  Q
    |||||||| |||  ||||||||||||||||  ||||| || ||||||||| |||||||||||||||| ||  ||||||| ||||| ||||||||| ||||    
T  18105508 atgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcaacaacgttaaaattcttatggagagcctgccgc 18105409  T
Q  318 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
    |||||||  || ||||||||||||||||||||||| |||||||||||||||||||||    
T  18105408 ccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggata 18105353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 213 - 374
Target Start/End: Complemental strand, 9438287 - 9438126
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||| |||   |||||| ||||||||  || ||  | ||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||    
T  9438287 tttagatgagatggaacgaatctcttttagcttaaccaaagtctttggttcgaatccagccttgggcatgcagcagggttaaaactcttaggaagaacct 9438188  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
     |||||||||||  ||||||||| || ||||||||||| ||| |||||||||||||||||||    
T  9438187 gccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 214 - 321
Target Start/End: Complemental strand, 44732723 - 44732616
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| |||||||| ||||||||  ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  44732723 ttagatgagatggaacgggtctcttatagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctg 44732624  T
Q  314 ccgcccat 321  Q
    ||||||||    
T  44732623 ccgcccat 44732616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 214 - 376
Target Start/End: Original strand, 993745 - 993906
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    ||||||||||||| ||  ||||||| ||||||||  ||||| || |||||||||||| ||||||||||||||||| || |||||||||||||||| | |     
T  993745 ttagatgagatgacacgtgtctcttatagcttaaccaaggtcctgggttcgaattcaaccttgggcatgcagcagcgt-aaaactcttagggagaacttg 993843  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    |||||||||||| ||| ||||||||  | |||||||| ||||| |||||||| ||||||||||    
T  993844 ccgcccatttgggtcctacaatactgaatggattagtttccgccgttgcgcgtggaggatacc 993906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 214 - 336
Target Start/End: Complemental strand, 12133380 - 12133258
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| |||  ||||||||||||||||| |||||  | ||||||||| ||||||||| |||||||||  |||||||||||||||||||||||     
T  12133380 ttagatgagatggaacgagtctcttctagcttaatcaaggtcatgggttcgaatccagccttggacatgcagcaacgttaaaactcttagggagagcctg 12133281  T
Q  314 ccgcccatttggatcccacaata 336  Q
    ||| |||||||| ||| ||||||    
T  12133280 ccgtccatttgggtcctacaata 12133258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 206 - 348
Target Start/End: Original strand, 33756960 - 33757102
Alignment:
Q  206 aagaacatttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttaggg 305  Q
    ||||||| ||||||||||||| || |||||||||||||||||| ||||||||  ||||||||||||||||| |||| ||  || |||||||||||||||     
T  33756960 aagaacacttagatgagatgacacgggtctcttctagcttaatcaaggttcttagttcgaattcagccttgagcatacaatagcgttaaaactcttagga 33757059  T
Q  306 agagcctaccgcccatttggatcccacaatactcgagggatta 348  Q
    ||||| |  ||| |||||| ||| |||||| || |||||||||    
T  33757060 agagcttgtcgctcatttgaatcgcacaatgcttgagggatta 33757102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 17981489 - 17981652
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| |||  ||||||||||||||||  || || ||   ||  ||| ||| |||||||||||| ||   |||||||||||||||||||| |     
T  17981489 ttagatgagatggaacgagtctcttctagcttaaccaaagtcctgaatttaaatccagtcttgggcatgcaacaacattaaaactcttagggagagcttg 17981588  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    ||||  |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  17981589 ccgca-atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccg 17981652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 382
Target Start/End: Complemental strand, 37180101 - 37179983
Alignment:
Q  259 ggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcag 358  Q
    ||||||||| ||| ||||| |||||| ||||||     |||||||||||||  | |||||||||||  |||||||||||||||||||||||||| ||||     
T  37180101 ggttcgaatccagtcttggacatgcaacagtgt-----ctcttagggagagtgtgccgcccatttgagtcccacaatactcgagggattagtctacgcac 37180007  T
Q  359 ttgcgcgcggaggatacccgattt 382  Q
    ||||||||||||||||||||||||    
T  37180006 ttgcgcgcggaggatacccgattt 37179983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 300 - 382
Target Start/End: Original strand, 25423821 - 25423903
Alignment:
Q  300 ttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  25423821 ttagggagaacctgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacccgattt 25423903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 44752344 - 44752199
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    ||||||||||||| ||| ||||||||||||||||  ||  | ||||||||||||  || |||||||||||| ||  |||||||||||| |||||||| |     
T  44752344 ttagatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatcaagtcttgggcatgcaacaacgttaaaactctttgggagagcttg 44752245  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagt 359  Q
    || || |||||| | | |||||||||||||||||||||||| ||||    
T  44752244 ccaccaatttgggttctacaatactcgagggattagtctccacagt 44752199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 37568877 - 37568785
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttaggga 306  Q
    |||||||||||| ||| ||| |||||||||||||  ||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  37568877 ttagatgagatggaacgggtttcttctagcttaaccaaggtcctgggttcgaatccagccttaggcatgcagcagtgttaaaactcttaggga 37568785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 38463964 - 38464114
Alignment:
Q  232 gtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccca 331  Q
    |||| ||||| |||||  || ||||||| ||||||| |||||||||||||||| ||  |||||||||||| | | ||||  |||| | |||||  |||||    
T  38463964 gtcttttctaacttaaccaaagttctagattcgaatccagccttgggcatgcaacaccgttaaaactcttggagggagctaaccgtctatttgagtccca 38464063  T
Q  332 caatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||||||| |||||||||  ||| ||||||| |||||||||| |||||    
T  38464064 caatactcgagtgattagtctttgcaattgcgcgtggaggatacctgattt 38464114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 7157507 - 7157600
Alignment:
Q  232 gtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttgg 325  Q
    |||||||||| |||||  ||| | ||||||||||||  ||||||||||||||||||  ||||||||||||||||||||||| ||||| ||||||    
T  7157507 gtctcttctaacttaaccaagatcctaggttcgaatctagccttgggcatgcagcaacgttaaaactcttagggagagcctgccgcctatttgg 7157600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 7020446 - 7020352
Alignment:
Q  277 ggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggagga 372  Q
    ||||||||||| |||||||| ||||||||||| | | |||||||||||| ||| ||||| |||||| ||||||||||  |||||||||||||||||    
T  7020446 ggcatgcagcaatgttaaaa-tcttagggagaacttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 38743788 - 38743879
Alignment:
Q  273 cttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgc 364  Q
    |||||||||||||||  ||||||||| || |||||||| | |||| |||||||||| |||||| ||  ||||||||||||||||||||||||    
T  38743788 cttgggcatgcagcaacgttaaaacttttggggagagcttgccgctcatttggatctcacaatgctttagggattagtctccgcagttgcgc 38743879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 380
Target Start/End: Complemental strand, 38373097 - 38372978
Alignment:
Q  259 ggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcag 358  Q
    ||||||||| || ||||  ||||||||||| | ||||||||||||| ||||| | ||||||||  || ||||||||| ||| ||| ||||||||   |||    
T  38373097 ggttcgaatccaaccttatgcatgcagcagcggtaaaactcttaggaagagcttgccgcccat--gggtcccacaatgctcaaggaattagtctatacag 38373000  T
Q  359 ttgcgcgcggaggatacccgat 380  Q
    ||||||||||||||||||||||    
T  38372999 ttgcgcgcggaggatacccgat 38372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 14551565 - 14551633
Alignment:
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||| |||||| ||| ||||| |||||||||||| ||||||||||||||||| |||||||| ||||||    
T  14551565 ccgcctatttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgattt 14551633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 37092241 - 37092181
Alignment:
Q  318 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||| ||||||| | ||||||||||||||||||||||||| || |||||||||||||    
T  37092241 ccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccg 37092181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 39401172 - 39401070
Alignment:
Q  261 ttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagtt 360  Q
    ||||||||||||||||||||||||| |   |||||||| |||||||||||    || |||||| | ||||||||| |||| | |||||| ||||||||||    
T  39401172 ttcgaattcagccttgggcatgcagtatcattaaaacttttagggagagctcgtcgtccatttaggtcccacaatgctcgtgagattagactccgcagtt 39401073  T
Q  361 gcg 363  Q
    |||    
T  39401072 gcg 39401070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 1682132 - 1682181
Alignment:
Q  333 aatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  1682132 aatactcgagggattagtctccgcagttgcgcacagaggatacccaattt 1682181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 14121982 - 14121894
Alignment:
Q  264 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtct 352  Q
    |||||||| ||||  |||||||||  ||||||| |||||| |||| | | |||||||||||  ||||||||| ||||||||||||||||    
T  14121982 gaattcagtcttgaacatgcagcaacgttaaaattcttagagagaacttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 17655755 - 17655822
Alignment:
Q  317 cccatttggatcccacaatactcgagggattagtctccgcagttgc--gcgcggaggatacccgattt 382  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  17655755 cccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgattt 17655822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 24413011 - 24412909
Alignment:
Q  279 catgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||  ||||||||||| ||| ||||| | || || |||||  |||||||||||| |||| |||||||||||||||| |||  |||||||||||     
T  24413011 catgcagcaacgttaaaactctaagg-agagcttgccacctatttgagtcccacaatacttgaggaattagtctccgcagttccgctaggaggataccca 24412913  T
Q  379 attt 382  Q
    ||||    
T  24412912 attt 24412909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 34483453 - 34483541
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttag 303  Q
    |||||| |||||| ||| |||| |||||||||||  || ||||| ||||| ||||||| ||||| |||||| ||| ||||||||||||||    
T  34483453 ttagataagatgacacatgtcttttctagcttaaccaaagttct-ggttcaaattcagtcttggacatgcaacagcgttaaaactcttag 34483541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 39562259 - 39562316
Alignment:
Q  317 cccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
    |||||||| ||||||||||| |||| |||||| |||||||||||| || |||||||||    
T  39562259 cccatttgaatcccacaatattcgaaggattaatctccgcagttgtgctcggaggata 39562316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 32643028 - 32642964
Alignment:
Q  319 catttggatcccacaatactcgagggattagtctccgca-gttgcgcgcggaggatacccgattt 382  Q
    |||||| ||||||||| ||||||| |||||||||| | | ||||| |||||||||||||||||||    
T  32643028 catttgaatcccacaagactcgagagattagtctctgtaagttgcacgcggaggatacccgattt 32642964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 42905775 - 42905689
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactct 300  Q
    ||||||||||||||  | | |||||| |||||||| |||||| |||| ||||||| ||  ||| | ||||||||||||||||||||||    
T  42905775 tttagatgagatgacgcggatctcttttagcttaactaaggtcctag-ttcgaatccaaactttgtcatgcagcagtgttaaaactct 42905689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 28365940 - 28366014
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcag 288  Q
    |||||||||||| |||  |||||||||| |||||  |||||  |  |||||||| ||||||||||||||||||||    
T  28365940 ttagatgagatggaacgcgtctcttctaacttaaccaaggtcgtgagttcgaatgcagccttgggcatgcagcag 28366014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 17627550 - 17627642
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttaggga 306  Q
    ||||| ||||||| ||  ||||||||||  ||||  ||||| ||  |||||||| |||||||||||||||| ||  ||||||| |||||||||    
T  17627550 ttagacgagatgacacgcgtctcttctaatttaaccaaggtcctgagttcgaatccagccttgggcatgcaacaacgttaaaattcttaggga 17627642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 39314487 - 39314547
Alignment:
Q  264 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttg 324  Q
    ||||||||  ||||||||||||| | |||||||||| |||||||||  | |||||||||||    
T  39314487 gaattcagttttgggcatgcagctgcgttaaaactcgtagggagagtttgccgcccatttg 39314547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 213 - 377
Target Start/End: Original strand, 22022110 - 22022274
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||  |||||||||||||||||| | |    
T  22022110 tttagatgagatggaacaggtctcttctagcttaactaaggttgtgggttcgaatccagccttgggcatgcagcagcattaaaactcttagggagaactt 22022209  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggataccc 377  Q
     || ||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||    
T  22022210 gccacccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggataccc 22022274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 16756073 - 16756241
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| | |||||||||||||||  |||||||| |||| ||||||||| |||||||||||| || ||||||||||||||||||||| |     
T  16756073 ttagatgagatggaacggatctcttctagcttaaccaaggttctgggtttgaattcagcattgggcatgcagaagcgttaaaactcttagggagagcatg 16756172  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
     ||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  16756173 tcgtgcatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgattt 16756241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 234 - 382
Target Start/End: Complemental strand, 18428271 - 18428124
Alignment:
Q  234 ctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccaca 333  Q
    ||||| ||||||||  |||||||| | ||||||| || ||||||||||||||||||||||||||| |||||||||| || | | ||||||||  ||||||    
T  18428271 ctcttgtagcttaaccaaggttctggattcgaatccaaccttgggcatgcagcagtgttaaaacttttagggagagtctgctgtccatttggc-cccaca 18428173  T
Q  334 atactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  18428172 atgctcgagggattagtctctgcagttgcgcgcggaggatacccgattt 18428124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 256 - 376
Target Start/End: Complemental strand, 7242915 - 7242795
Alignment:
Q  256 ctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccg 355  Q
    |||||||||||| ||| ||||| |||||||||  |||||||||||||||||||| ||||| |||||||| ||| || |||||||||||||||||||||||    
T  7242915 ctaggttcgaatccagtcttggacatgcagcaacgttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccg 7242816  T
Q  356 cagttgcgcgcggaggatacc 376  Q
    |||||||||||||| ||||||    
T  7242815 cagttgcgcgcggaagatacc 7242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 28724664 - 28724827
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| |||  ||||||||||||||||| ||| | || | ||||||||||||||||  |||||| ||||||||||||||||||| |||| ||     
T  28724664 ttagatgagatggaacgagtctcttctagcttaataaag-tcctggattcgaattcagccttgaacatgcaacagtgttaaaactcttaggaagagtctg 28724762  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    ||| |||||||  ||| |||||  |||||||||||||||||||| ||||||||||||||||||||    
T  28724763 ccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacccg 28724827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 9781109 - 9780976
Alignment:
Q  244 ttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagg 343  Q
    |||||||||||  |  |||||||| |||||||||||||||||||| |||||||||||||||||||| |  |||||||||||| ||||||||| |||||||    
T  9781109 ttaattaaggtcttgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtcggccgcccatttgggtcccacaatgctcgagg 9781010  T
Q  344 gattagtctccgcagttgcgcgcggaggataccc 377  Q
    ||||||| |||| ||||| |||||||| ||||||    
T  9781009 gattagtatccgtagttgggcgcggagaataccc 9780976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 261 - 378
Target Start/End: Original strand, 36806649 - 36806766
Alignment:
Q  261 ttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagtt 360  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||| | || |||||||||||| | ||||||| ||||||||||||||||| ||||||    
T  36806649 ttcgaattcagccttgggcatacagtagcgttaaaactcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctctgcagtt 36806748  T
Q  361 gcgcgcggaggatacccg 378  Q
    || |||||||||||||||    
T  36806749 gcacgcggaggatacccg 36806766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 375
Target Start/End: Original strand, 45806227 - 45806388
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||  ||| ||||||||||| |||||  ||||| ||  |||||||||||| ||||||||||||||||| |||||||||||||||||||| ||    
T  45806227 ttagatgagatagaacgggtctcttctatcttaaccaaggtcctgagttcgaattcagtcttgggcatgcagcagttttaaaactcttagggagagcata 45806326  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatac 375  Q
    ||||| ||||   || ||||||| ||||  |||||||||| |||||| |||| |||||||||    
T  45806327 ccgcctatttaagtctcacaatattcgaatgattagtctctgcagttacgcgtggaggatac 45806388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 42297523 - 42297430
Alignment:
Q  283 cagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    |||||| |||||||||||||||||||| || ||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||    
T  42297523 cagcagcgttaaaactcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 42297430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 259 - 382
Target Start/End: Original strand, 12035585 - 12035709
Alignment:
Q  259 ggttcgaattcagccttgggcatgcagcagtgttaaaa-ctcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgca 357  Q
    ||||||||| ||||||| |||||||| || |||||||| ||||||||||||| || |||||||||||| ||||||||| ||||||||||||||||| |||    
T  12035585 ggttcgaatccagcctttggcatgcaacattgttaaaaactcttagggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctcagca 12035684  T
Q  358 gttgcgcgcggaggatacccgattt 382  Q
     |||| || ||| ||||| ||||||    
T  12035685 attgcacgtggatgatactcgattt 12035709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 15642526 - 15642614
Alignment:
Q  294 aaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||||||||||||  | |||||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgattt 15642614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 213 - 376
Target Start/End: Original strand, 32534073 - 32534235
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||| |||| || ||| |||||||||||||  |||||| | | ||| |||||||| ||| ||||||| ||  |||||||||||||| |||||| |    
T  32534073 tttagatgatatgacacgggtttcttctagcttaaccaaggttttggattcaaattcagctttgagcatgcaacaacgttaaaactcttagagagagctt 32534172  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    |||||||||| || || |||||| |||||| | |||||||||||| |||||||| |||||||||    
T  32534173 accgcccattagg-tctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacc 32534235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 214 - 362
Target Start/End: Original strand, 10841008 - 10841157
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||||||||||||||||||| |||||  ||| || | ||||| |||||||||||||||||| | ||  ||||||| ||||||||||| | |     
T  10841008 ttagatgagatgaaacaggtctcttctatcttaaccaagattttgggttcaaattcagccttgggcatgtaacaacgttaaaattcttagggagaacttg 10841107  T
Q  314 ccgcccattt-ggatcccacaatactcgagggattagtctccgcagttgc 362  Q
    || ||||||| || ||||||||| || ||||||||| | |||||||||||    
T  10841108 cctcccatttagggtcccacaatgcttgagggattaatttccgcagttgc 10841157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 24801372 - 24801512
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    ||||||||||||| || | | |||| ||| |||| ||| || || ||||||||| ||||||| ||||||||||| |||||||||||||||||||||  ||    
T  24801372 ttagatgagatgacacggatttcttatagattaactaaagtccttggttcgaatccagccttaggcatgcagcactgttaaaactcttagggagagttta 24801471  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctcc 354  Q
    ||| |||||||  |||||||| |||| || |||||||||||    
T  24801472 ccgtccatttgagtcccacaagactcaagagattagtctcc 24801512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 237 - 382
Target Start/End: Original strand, 46864105 - 46864250
Alignment:
Q  237 ttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaata 336  Q
    |||||||||||| || ||| | ||||| ||| |||| |||||||||||| || ||||||| ||||||||||| | | ||| |||||||| |  ||||||     
T  46864105 ttctagcttaatcaaagttttgggttcaaatccagctttgggcatgcagtagcgttaaaattcttagggagaacttgccgtccatttgggtttcacaatg 46864204  T
Q  337 ctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
     |||||||||||||||| ||||||||||||  |||||||| |||||    
T  46864205 ttcgagggattagtctctgcagttgcgcgcaaaggatacctgattt 46864250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 39547478 - 39547355
Alignment:
Q  250 aaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattag 349  Q
    |||||| | ||||||||| ||| |||| |||||||||||||| ||||||||||||| ||| || ||||| |||| | || ||||||  |||| ||||||     
T  39547478 aaggttatgggttcgaatccagtcttgagcatgcagcagtgtcaaaactcttagggggagtctgccgcctatttaggtctcacaatgttcgacggattaa 39547379  T
Q  350 tctccgcagttgcgcgcggaggat 373  Q
    ||||||||||||||||| ||||||    
T  39547378 tctccgcagttgcgcgcagaggat 39547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 370
Target Start/End: Complemental strand, 31733842 - 31733685
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||||||||||| | ||| || ||||||| |||||  || ||| | |||||||||||||| || |||||||||||| ||||||||||||||||||||  |    
T  31733842 tttagatgagatcacacatgtttcttctaacttaaccaatgttttgggttcgaattcagcattaggcatgcagcagagttaaaactcttagggagagttt 31733743  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggag 370  Q
      || |||| ||| |  ||||| ||| || | |||||||||| |||||||||||||||    
T  31733742 gtcgtccatctgggtgtcacaagactggatgaattagtctccacagttgcgcgcggag 31733685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 10367575 - 10367663
Alignment:
Q  294 aaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||||| |||||| ||||||||||||||| ||| ||||| ||||| |||||| |||||||||||||| ||| || |||||||||||    
T  10367575 aaactcttaaggagagtctaccgcccatttgggtccaacaatgctcgaaggattaatctccgcagttgcgtgcgaagaatacccgattt 10367663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 10750589 - 10750756
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    ||||||||||||||||| |||| |||||  ||||  |||||  | |||||||||  |  ||||||||| || ||| |||||||||||||||  | || |     
T  10750589 ttagatgagatgaaacatgtcttttctaatttaaccaaggtcttgggttcgaatctaatcttgggcatacatcagcgttaaaactcttaggt-gcgcttg 10750687  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||||||||||| ||||||  |||||||||||||||   ||||||||||| ||||||||| |||||    
T  10750688 ccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacctgattt 10750756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 213 - 361
Target Start/End: Complemental strand, 25655415 - 25655267
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||| ||||  | ||||||| |||||| |||||||| |||||||||| | | ||||||||||||||  |||||||||||||| |||||  |    
T  25655415 tttagatgagatggaacaaatatcttctaacttaatcaaggttctgggttcgaatttaacattgggcatgcagcaacgttaaaactcttagagagagttt 25655316  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttg 361  Q
     ||| ||||||  ||| |||||| ||  || |||||||||| |||||||    
T  25655315 gccgtccatttaaatcacacaatgctaaagagattagtctctgcagttg 25655267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 28506279 - 28506369
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttag 303  Q
    ||||||||| |||| ||||||||||||||| |||| ||||||||| | |||||||| | | |||| |||||||||||||| ||||||||||    
T  28506279 tttagatgaaatgacacaggtctcttctagtttaactaaggttctggattcgaatttaactttggacatgcagcagtgttgaaactcttag 28506369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 376
Target Start/End: Original strand, 44913180 - 44913262
Alignment:
Q  294 aaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    ||||||||||||||||| | |||||||| ||| ||||||||| |||||| |||||||||| |||||| ||||| |||||||||    
T  44913180 aaactcttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacc 44913262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 36982345 - 36982441
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagag 309  Q
    |||||||||||||| ||||||||||||||| ||||  |||||    ||||||||||||||||| | |||||| ||  ||||||||||||||||||||    
T  36982345 tttagatgagatgacacaggtctcttctagtttaaccaaggtctcgggttcgaattcagccttagacatgcaacaacgttaaaactcttagggagag 36982441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 40019232 - 40019327
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagag 309  Q
    |||||||| |||| ||  |||||||||| |||||| |||||| | |||||||||||||||||||  ||||||||  |||||||||||| |||||||    
T  40019232 ttagatgaaatgatacgagtctcttctaacttaatcaaggttttgggttcgaattcagccttggatatgcagcaacgttaaaactcttggggagag 40019327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 29124735 - 29124825
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttag 303  Q
    |||||||||||||||||  ||||||||||||||||  | |||  |  |||||||| |||| ||||||||||||||| ||||||||||||||    
T  29124735 tttagatgagatgaaacgagtctcttctagcttaaccagggtcatgagttcgaatccagcattgggcatgcagcagcgttaaaactcttag 29124825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 32883622 - 32883561
Alignment:
Q  289 tgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagt 350  Q
    |||||||||||||||||||||  | ||||||||||||| ||||||| |||||||||||||||    
T  32883622 tgttaaaactcttagggagagtttgccgcccatttggaccccacaagactcgagggattagt 32883561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 17600649 - 17600561
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactctt 301  Q
    |||||||||||||| || |||||||||||||||||  |||||  | |||| ||||||||||||| ||||||| ||  ||||||||||||    
T  17600649 tttagatgagatgacacgggtctcttctagcttaaccaaggtcttgggttagaattcagccttgagcatgcaacatcgttaaaactctt 17600561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 49071673 - 49071736
Alignment:
Q  319 catttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||| ||||| |||| |||||||    
T  49071673 catttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgattt 49071736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 32883699 - 32883625
Alignment:
Q  235 tcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagag 309  Q
    |||||||||||||  ||| || | ||||||||| |||| |||| |||||||||| ||||||||||||||||||||    
T  32883699 tcttctagcttaaccaagattttgggttcgaatccagcattggacatgcagcagcgttaaaactcttagggagag 32883625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 36522363 - 36522259
Alignment:
Q  237 ttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaata 336  Q
    ||||||||||| |||  ||||| |||||||| ||| ||| | |||||||||  ||||||||||||||||||||  | ||| |||||||  |||||||||     
T  36522363 ttctagcttaactaaatttctaagttcgaatacagtcttagacatgcagcaaggttaaaactcttagggagagtttgccgtccatttgagtcccacaatg 36522264  T
Q  337 ctcga 341  Q
    |||||    
T  36522263 ctcga 36522259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 21774595 - 21774668
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcag 288  Q
    |||||||||||| | || ||||||||||||||||| |||||| | ||||||||| ||| ||||| ||||||||||    
T  21774595 ttagatgagatgca-catgtctcttctagcttaatcaaggttttgggttcgaatccagtcttggacatgcagcag 21774668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 16552484 - 16552581
Alignment:
Q  206 aagaacatttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttag 303  Q
    ||||||| ||||||||||||| |||| |||||| ||||||||| ||| || | | ||| |||||| | |||| ||| |||| | ||||||||||||||    
T  16552484 aagaacacttagatgagatgacacagatctcttatagcttaatcaagattatggattcaaattcaacattggacatacagctgcgttaaaactcttag 16552581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 2044472 - 2044556
Alignment:
Q  298 tcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||||||||  ||||||| |||||| | ||||||| ||| || |||||||||| |||||| ||||  ||| |||||||||||    
T  2044472 tcttagggagagattaccgcctatttgggttccacaatgctcaagagattagtctctgcagtttcgcgtagagaatacccgattt 2044556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 35540132 - 35540036
Alignment:
Q  212 atttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggaga 308  Q
    |||| |||||||||||| |  | |||| ||||||||| ||||||||  ||  ||||||||||||| ||||||| ||  |||||||||||||| ||||    
T  35540132 atttggatgagatgaaataaatttcttttagcttaatcaaggttctgagtctgaattcagccttgtgcatgcaacaacgttaaaactcttagagaga 35540036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 28286509 - 28286442
Alignment:
Q  288 gtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccg 355  Q
    ||||||||| | |||||||||| || ||||||||||  |||||||||||| ||| | |||||||||||    
T  28286509 gtgttaaaatttttagggagagtctgccgcccatttaaatcccacaatacccgatgaattagtctccg 28286442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 17888729 - 17888819
Alignment:
Q  206 aagaacatttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaa 296  Q
    |||||| ||||||||||||||  || |||||||||||||||| |||| || | |||||| ||  | |||| |||||||| ||| |||||||    
T  17888729 aagaacgtttagatgagatgacgcatgtctcttctagcttaactaagattttgggttcggatctaaccttaggcatgcaacagcgttaaaa 17888819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 9639630 - 9639557
Alignment:
Q  291 ttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgc 364  Q
    ||||||||||| |||| |   |||||||||||||| ||| | || ||||||| |||||||||||||| ||||||    
T  9639630 ttaaaactctttgggaaaatataccgcccatttgggtcctaaaagactcgagagattagtctccgcaattgcgc 9639557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 13546416 - 13546537
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||| ||  ||  ||||||||| ||||| ||| ||  | ||||||||| ||| |||   |||| | || |||||||||||||| ||||||  |    
T  13546416 tttagatgagacgacgcatatctcttctaacttaactaaagtcgtgggttcgaatccagtcttatacatgtaacaatgttaaaactcttatggagagttt 13546515  T
Q  313 accgcccatttggatcccacaa 334  Q
    |||||||||||| |||||||||    
T  13546516 accgcccatttgaatcccacaa 13546537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 33721007 - 33721079
Alignment:
Q  290 gttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgc 362  Q
    |||||| |||||||||||||  | ||| |||||||||||||||||   ||||| ||||||||| |||| ||||    
T  33721007 gttaaatctcttagggagagtttgccgtccatttggatcccacaaggttcgagagattagtcttcgcaattgc 33721079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 214 - 374
Target Start/End: Complemental strand, 30996115 - 30995955
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| ||||||||||| |||||  ||||| || ||||||||| |  ||||||||||||| ||| |||||||||||||||||||| ||     
T  30996115 ttagatgagatggaacgggtctcttctatcttaaccaaggtcctgggttcgaatccgaccttgggcatgcaacagcgttaaaactcttagggagagtctg 30996016  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30996015 ccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 30995955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 25224690 - 25224854
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||||||| |||||||||||||||||  ||||| || |||||||||  ||  ||||| ||||||||| ||||||||||||| ||||| | |     
T  25224690 ttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatcaagttttgggaatgcagcagcgttaaaactcttaaggagaacttg 25224789  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||| | ||||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  25224790 ccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccg 25224854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 214 - 382
Target Start/End: Complemental strand, 48204461 - 48204293
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| |||  ||||||||||||||||  |||||  | ||||||||| |||||||||||||||||||  |||||||| |||||||||||| |     
T  48204461 ttagatgagatggaacgagtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaacgttaaaacccttagggagagcttg 48204362  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
     || |||||||| | ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  48204361 tcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgattt 48204293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 214 - 374
Target Start/End: Original strand, 27763714 - 27763872
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||  ||| ||||||  |||||||||  ||||| || ||||||||| ||||||||||||| || |||||||||||||||||||||||| ||     
T  27763714 ttagatgagatagaacgggtctc--ctagcttaaccaaggtcctgggttcgaatccagccttgggcatacaacagtgttaaaactcttagggagagtctg 27763811  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
    ||| |||||||  ||||||||| |||||||||||||||||||||||||||||| |||||||    
T  27763812 ccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggata 27763872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 264 - 377
Target Start/End: Original strand, 20861289 - 20861402
Alignment:
Q  264 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcg 363  Q
    |||| |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| | ||| ||| ||||||||||||||||||||||||| |    
T  20861289 gaatccagcattgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtg 20861388  T
Q  364 cgcggaggataccc 377  Q
    ||||||||||||||    
T  20861389 cgcggaggataccc 20861402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 40294602 - 40294771
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||||||||||||| ||  ||||| |||| |||||| ||||| ||  |||||||| |||||||||  ||||| || |||||||||||||||||| ||| |    
T  40294602 tttagatgagatgacacgagtctcctctaccttaatcaaggtcctgagttcgaatccagccttggatatgcaacaatgttaaaactcttagggaaagctt 40294701  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
     |||| |||||| |||||||||||||||| |||||||||||||||||||||| |  ||||||||||||||    
T  40294702 gccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgattt 40294771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 261 - 382
Target Start/End: Original strand, 1642644 - 1642765
Alignment:
Q  261 ttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagtt 360  Q
    |||||||  |||||||  |||||||| ||||||||||| |||||||||| |||||| |||||||| |||||||||||| ||||||||||| |||||||||    
T  1642644 ttcgaatctagccttgaacatgcagccgtgttaaaacttttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagtt 1642743  T
Q  361 gcgcgcggaggatacccgattt 382  Q
    |||||||||||||| |||||||    
T  1642744 gcgcgcggaggatatccgattt 1642765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 38331119 - 38331287
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| | | ||||||||||| |||||  || || ||  ||| |||| || | ||| ||||||||||| |||||||||||||| |||||| |     
T  38331119 ttagatgagatggatcgggtctcttctaacttaaccaatgtcctgagtttgaatccaactttgagcatgcagcagcgttaaaactcttagagagagcttg 38331218  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||||| |||||||||  | ||||||||||||||||||||||| |||||||||||||||||||    
T  38331219 ccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgattt 38331287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 231 - 381
Target Start/End: Complemental strand, 48211093 - 48210943
Alignment:
Q  231 ggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccc 330  Q
    ||||||||||| |||||| |||||| | ||||||||| |||||||| ||||||||||  ||||||||||||| ||||||| | ||| | |||| | ||||    
T  48211093 ggtctcttctaacttaatcaaggtttttggttcgaatccagccttgagcatgcagcaacgttaaaactcttatggagagcttgccgtctatttaggtccc 48210994  T
Q  331 acaatactcgagggattagtctccgcagttgcgcgcggaggatacccgatt 381  Q
    ||||||||||||| |||  ||||||||||||| |||||| |||||||||||    
T  48210993 acaatactcgaggaattgatctccgcagttgcacgcggaagatacccgatt 48210943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 260 - 382
Target Start/End: Original strand, 55123134 - 55123256
Alignment:
Q  260 gttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagt 359  Q
    |||||||| |||||||||  ||||||||| ||||||| ||||||||||||| | |  ||||||||| || |||||| |||||||||||||||| ||||||    
T  55123134 gttcgaatccagccttggaaatgcagcagcgttaaaattcttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtcttcgcagt 55123233  T
Q  360 tgcgcgcggaggatacccgattt 382  Q
    ||||||||||||||||| |||||    
T  55123234 tgcgcgcggaggatacctgattt 55123256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 14352545 - 14352694
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgg----gcatgcagcagtgttaaaactcttagggagag 309  Q
    |||||||||||| |||| ||||||||||||||||  ||| |  | ||||||||| |||||||||    ||||||||||||||||||||||||| ||||||    
T  14352545 ttagatgagatggaacaagtctcttctagcttaaccaagatattcggttcgaatccagccttggacatgcatgcagcagtgttaaaactcttacggagag 14352644  T
Q  310 cctaccgcccatttggatcccacaatactcgagggattagtctccgcagtt 360  Q
    | |  || |||||||||| || |||||||||||||||||||||||||||||    
T  14352645 cttgtcgtccatttggatacc-caatactcgagggattagtctccgcagtt 14352694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 38088626 - 38088737
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||||||| |||||||||||||||||  ||||||| |||||||||| |||| |||||||||||| || ||||||||||||||||||| | |     
T  38088626 ttagatgagatgaaacgggtctcttctagcttaaccaaggttccaggttcgaatccagctttgggcatgcagtagcgttaaaactcttagggagaacttg 38088725  T
Q  314 ccgcccatttgg 325  Q
    ||||| ||||||    
T  38088726 ccgcctatttgg 38088737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 8757435 - 8757499
Alignment:
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8757435 ccgcctatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 8757499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 378
Target Start/End: Original strand, 22288272 - 22288390
Alignment:
Q  260 gttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagt 359  Q
    |||||||||||||||||  |||||| || |||||||||||||||||||| | |  || |||||||  |  |||||||||| ||| ||||||||| |||||    
T  22288272 gttcgaattcagccttgaacatgcaacaatgttaaaactcttagggagaacttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagt 22288371  T
Q  360 tgcgcgcggaggatacccg 378  Q
    || ||||||||||||||||    
T  22288372 tgtgcgcggaggatacccg 22288390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 15283065 - 15283230
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||||||||||||| ||  |||||||||| ||||| ||||||    ||||||||| ||| | ||||||||||||| | |||||||||||| ||| ||  |    
T  15283065 tttagatgagatgatacgagtctcttctaacttaactaaggtg---ggttcgaatccagtcatgggcatgcagca-tcttaaaactcttatggaaagatt 15283160  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
     |||||||||||| ||||||||| |||||| ||||||||| |  | |||| | ||||||| |||||||||    
T  15283161 gccgcccatttgggtcccacaatgctcgagagattagtcttcataattgcccacggaggagacccgattt 15283230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 39950263 - 39950371
Alignment:
Q  274 ttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggat 373  Q
    |||| |||||||||| ||||||| | |||||||||  ||  ||  ||||||||||| ||||| ||||| ||||||||||||||||||||  |||||||||    
T  39950263 ttggacatgcagcagcgttaaaatttttagggagaatctgtcgttcatttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggat 39950362  T
Q  374 acccgattt 382  Q
    |||| ||||    
T  39950363 acccaattt 39950371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 259 - 382
Target Start/End: Original strand, 11767146 - 11767269
Alignment:
Q  259 ggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcag 358  Q
    |||||||||  | ||||||||||||| || | |||||||||||||  || || | |||||||||||  |||||||||| | || |||||||||| ||||     
T  11767146 ggttcgaatctatccttgggcatgcaacaatattaaaactcttagcaagtgcttgccgcccatttgagtcccacaatatttgaaggattagtcttcgcaa 11767245  T
Q  359 ttgcgcgcggaggatacccgattt 382  Q
    || |||| ||||||||||||||||    
T  11767246 ttacgcgtggaggatacccgattt 11767269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 291 - 378
Target Start/End: Original strand, 25739155 - 25739243
Alignment:
Q  291 ttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgc-agttgcgcgcggaggatacccg 378  Q
    |||||||||||||||||||  | |||||||||||| ||||| || ||||||   |||||||||||| ||||||| ||||||||||||||    
T  25739155 ttaaaactcttagggagagttttccgcccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggatacccg 25739243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 40318475 - 40318435
Alignment:
Q  338 tcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40318475 tcgagggattagtctccgcagttgcgcgcggaggatacccg 40318435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 43621402 - 43621294
Alignment:
Q  274 ttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaa-tactcgagggattagtctccgcagttgcgcgcggagga 372  Q
    ||||| ||||||||  ||||||||| ||||||||||| | || |||||||   || ||||| | ||||||||||||||||| | |||||||||| |||||    
T  43621402 ttgggtatgcagcaacgttaaaacttttagggagagcttgcctcccatttaagtctcacaaatgctcgagggattagtctctgtagttgcgcgcagagga 43621303  T
Q  373 tacccgatt 381  Q
    |||||||||    
T  43621302 tacccgatt 43621294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 44941314 - 44941255
Alignment:
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
    ||||||||||||||||||  || ||||||| ||||||||||||||||||||||||||||||    
T  44941314 ccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggata 44941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 42514595 - 42514693
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagca--gtgttaaaactcttagggagagc 310  Q
    ||||||||||||||||  |||||||||||||||| ||| ||  | ||||||||| || | ||||||||||| ||  | |||||||||||||||||||||    
T  42514595 ttagatgagatgaaacgtgtctcttctagcttaactaaagtcttgggttcgaatccaactttgggcatgcatcagcgcgttaaaactcttagggagagc 42514693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 22755652 - 22755725
Alignment:
Q  231 ggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagg 304  Q
    ||||| |||||| ||||  || || |||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  22755652 ggtctattctaggttaaccaaagtactaggttcgaatccagccttgggcatgcagcagcattaaaactcttagg 22755725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 354
Target Start/End: Original strand, 15446019 - 15446127
Alignment:
Q  250 aaggttctaggttcgaattcagccttgggcat----gcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgaggga 345  Q
    |||||| ||||||||||| |||||||||||||    ||||||||||||| | || || ||||||  | ||| |||||||| || |||||| ||||| |||    
T  15446019 aaggttttaggttcgaatccagccttgggcattcgtgcagcagtgttaatattcgtatggagagtttgccgtccatttgggtctcacaatgctcgacgga 15446118  T
Q  346 ttagtctcc 354  Q
    |||||||||    
T  15446119 ttagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 21223553 - 21223465
Alignment:
Q  265 aattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctc 353  Q
    ||||||| ||| | ||||||| |||||||||| | ||||||||||| |  |||| |||| ||||||||||| ||| ||  |||||||||    
T  21223553 aattcagtcttagacatgcagtagtgttaaaatttttagggagagcttgtcgcctatttagatcccacaatgctcaagaaattagtctc 21223465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 54877841 - 54877913
Alignment:
Q  231 ggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttag 303  Q
    ||||||||||| |||||  |||||| |  ||| |||||||||||||||||| || ||  ||||||||||||||    
T  54877841 ggtctcttctaacttaaccaaggttttgagtttgaattcagccttgggcatccaacaacgttaaaactcttag 54877913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 12411139 - 12411303
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||||||||||||||| |||||  ||||| ||  |||||||| |||||||||||||||||||| ||||||||||||||| |||| ||     
T  12411139 ttagatgagatggaacaggtctcttctaacttaaccaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtctg 12411238  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccg 378  Q
    ||||||||||   ||||||||| || ||||||||||||||| ||||||||||||| |||||||||    
T  12411239 ccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccg 12411303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 213 - 376
Target Start/End: Original strand, 21910195 - 21910357
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||||||||||||||||| ||||||||||||||||  ||| | || ||||||||| |||||||||||||||| ||  |||||||||||||| ||||| ||    
T  21910195 tttagatgagatgaaacaagtctcttctagcttaaccaagatcctgggttcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagtct 21910294  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
     |||| ||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  21910295 gccgctcatttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacc 21910357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 254 - 378
Target Start/End: Complemental strand, 12837007 - 12836883
Alignment:
Q  254 ttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctc 353  Q
    |||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||||   |||||||||||| ||||||||| || ||||||||||||||    
T  12837007 ttctgggttcgaatccagccttaggcatgcagcagcgttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctc 12836908  T
Q  354 cgcagttgcgcgcggaggatacccg 378  Q
    | |||||||||||||||||||||||    
T  12836907 cccagttgcgcgcggaggatacccg 12836883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 214 - 382
Target Start/End: Original strand, 31412114 - 31412281
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||| |||||||  ||| |||| ||||||  | || ||||||||||| |||||| ||||||||||||||||||||||||||||| ||     
T  31412114 ttagatgagatggaacgggtctctcatagtttaactaaggtcat-ggatcgaattcagctttgggcgtgcagcagtgttaaaactcttagggagagtctg 31412212  T
Q  314 ccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||||| | ||||||| ||||||  |||||||||| ||||||||| ||||||||| |||||||    
T  31412213 ccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggatatccgattt 31412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 213 - 376
Target Start/End: Complemental strand, 31107644 - 31107481
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    ||||||||||||||||  ||||||||||| ||||| |||||||||  |||||||| |||| |||| |||||| ||| |||||||||||| |||||||| |    
T  31107644 tttagatgagatgaaatgggtctcttctaacttaactaaggttctgagttcgaatccagcattggacatgcaacagcgttaaaactctttgggagagctt 31107545  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacc 376  Q
    |||| |||||||  |||||||||| ||||| |||||||||| | | |||||||| |||||||||    
T  31107544 accgtccatttgattcccacaatattcgagagattagtctctgtaattgcgcgcagaggatacc 31107481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 231 - 377
Target Start/End: Original strand, 28099251 - 28099397
Alignment:
Q  231 ggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatccc 330  Q
    ||||||||||| ||||| |||||| || ||||||||| |||||||||||||||||||||||||||||| |||||||||   |  || |||||||  | ||    
T  28099251 ggtctcttctaccttaactaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaacttttagggagaatttgtcgtccatttgagttcc 28099350  T
Q  331 acaatactcgagggattagtctccgcagttgcgcgcggaggataccc 377  Q
    | ||| ||||||||||||||||||||||||||| |||||||||||||    
T  28099351 ataatgctcgagggattagtctccgcagttgcgagcggaggataccc 28099397  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 423646 - 423782
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagccta 313  Q
    |||||||||||| ||||| |||||||||| ||||  |||||| | |||| |||| ||||||||||||||| |||| |||||||||||||| || |  ||     
T  423646 ttagatgagatggaacagatctcttctagtttaaccaaggttttgggtttgaatccagccttgggcatgctgcagcgttaaaactcttagagataaactg 423745  T
Q  314 ccgcccatttggatcccacaatactcgagggattagt 350  Q
    ||| |||||||  ||||||||| ||||||||||||||    
T  423746 ccgtccatttgagtcccacaatgctcgagggattagt 423782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 25084017 - 25084121
Alignment:
Q  206 aagaacatttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttaggg 305  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||| || ||  |  |||||||||||| ||||| ||||||||| |||||||||||||||||    
T  25084017 aagaacacttagatgagatgacacaagtctcttctagcttaatcaaagtcttgagttcgaattcagtcttggacatgcagcaatgttaaaactcttaggg 25084116  T
Q  306 agagc 310  Q
    |||||    
T  25084117 agagc 25084121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 9536844 - 9536918
Alignment:
Q  300 ttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggata 374  Q
    ||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  9536844 ttagggagagcctaccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 278382 - 278550
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcct 312  Q
    |||||||||||||| ||  |||||||||||||||| ||||||  |  ||| |||| |||| ||||||||||| ||   |||||||||||| ||||||  |    
T  278382 tttagatgagatgacacgagtctcttctagcttaactaaggtcttgagtttgaatccagctttgggcatgcaacaca-ttaaaactcttatggagagttt 278480  T
Q  313 accgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
     ||| |||||| | |||||||| |||| |||||||||||  | ||||||| | |||||||||||||||||    
T  278481 gccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgattt 278550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 361
Target Start/End: Complemental strand, 21029134 - 21028982
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcag------cagtgttaaaactcttaggga 306  Q
    |||| ||||||||  || |||||||||||||||||  |||||  | ||||||||| |||||||||||||||||      ||| ||||||||||||||  |    
T  21029134 tttatatgagatggcacgggtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagatgcagcagcgttaaaactcttag--a 21029037  T
Q  307 gagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttg 361  Q
    |||  | |||||||||||| | ||||||  ||| |||||||||||||||||||||    
T  21029036 gagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 17177189 - 17177290
Alignment:
Q  274 ttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggat 373  Q
    |||||||||||||||  |||||||||||| ||| ||  | | | | ||||||||| ||||||||||||||||||| |||||| | ||| |||||||||||    
T  17177189 ttgggcatgcagcagctttaaaactcttaaggaaagttttctgtctatttggatctcacaatactcgagggattaatctccgtaattgtgcgcggaggat 17177288  T
Q  374 ac 375  Q
    ||    
T  17177289 ac 17177290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 343
Target Start/End: Original strand, 5944840 - 5944962
Alignment:
Q  221 agatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgccca 320  Q
    |||||| || |||||||| || |||||  ||||| ||  |||||||||||| ||| | |||| | || |||||||||| ||||||||||  | |||||||    
T  5944840 agatgatacgggtctcttttaacttaaccaaggtcctgagttcgaattcagtctttgacatgtaacattgttaaaacttttagggagagtttgccgccca 5944939  T
Q  321 tttggatcccacaatactcgagg 343  Q
    ||| ||||| |||||||||||||    
T  5944940 tttagatcctacaatactcgagg 5944962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 382
Target Start/End: Original strand, 1534320 - 1534409
Alignment:
Q  291 ttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    |||||||||||||||||||| |  ||||||||||  || |||||| ||||||| |||  |||||||||||  |||||||||||| |||||||    
T  1534320 ttaaaactcttagggagagcttgtcgcccatttgagtcgcacaatgctcgaggaattgatctccgcagtt--gcgcggaggatatccgattt 1534409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 8507194 - 8507135
Alignment:
Q  213 tttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagc 272  Q
    |||||||||||||| || | | ||||||||||||||||||||| | ||||||||||||||    
T  8507194 tttagatgagatgacaccgatttcttctagcttaattaaggttttgggttcgaattcagc 8507135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 377
Target Start/End: Complemental strand, 15614719 - 15614560
Alignment:
Q  218 atgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgc 317  Q
    |||||||| |||  |||||||||| |||||  || ||  | ||||||||||||| ||||| |||| ||||  ||||||||| || || ||| | |||| |    
T  15614719 atgagatggaacgagtctcttctaacttaaccaatgtcatgggttcgaattcagtcttggacatgtagcaacgttaaaacttttcggaagaacttaccac 15614620  T
Q  318 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggataccc 377  Q
    | |||||  ||||||||| ||| ||| |||||||| | |||||||| | |||||||||||    
T  15614619 ctatttgagtcccacaatgctctaggaattagtcttcacagttgcgtgtggaggataccc 15614560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 29185307 - 29185378
Alignment:
Q  237 ttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggaga 308  Q
    |||||| |||| ||||||||||||||||||| |||| || | |||||| ||  |||||||||||||||||||    
T  29185307 ttctagtttaactaaggttctaggttcgaatccagcattagacatgcatcaacgttaaaactcttagggaga 29185378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 21028924 - 21028845
Alignment:
Q  280 atgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttg 361  Q
    ||||||||| ||||||||||||||  ||||  | |||||||||||| | ||||||  ||| |||||||||||||||||||||    
T  21028924 atgcagcagcgttaaaactcttag--agagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 28933179 - 28933277
Alignment:
Q  264 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgc 362  Q
    |||||||||||| | |||||| ||  ||||||| |||||| |||||  | |||||||||||| | ||||||| |||||| || |||| |||||||||||    
T  28933179 gaattcagccttagacatgcaacatcgttaaaattcttagagagagtttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttgc 28933277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 27296 - 27212
Alignment:
Q  293 aaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggataccc 377  Q
    |||||||||||||||||| | ||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||||||||    
T  27296 aaaactcttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggataccc 27212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 32417 - 32330
Alignment:
Q  211 catttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaact 298  Q
    ||||||||| ||||| ||| ||||||||||||||| |  |||||||| ||||||||| ||  |||||| ||||||||| |||||||||    
T  32417 catttagataagatggaacgggtctcttctagcttcaccaaggttctgggttcgaatccaatcttgggtatgcagcagcgttaaaact 32330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 29197 - 29134
Alignment:
Q  319 catttggatcccacaatactcgagggattagtctccgcagttgcgcgcggaggatacccgattt 382  Q
    ||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgattt 29134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 167846 - 167918
Alignment:
Q  214 ttagatgagatgaaacaggtctcttctagcttaattaaggttctaggttcgaattcagccttgggcatgcagcag 288  Q
    |||||||||||||||| |||||||||||||||||| |||||    ||||| ||| ||||||||||||||||||||    
T  167846 ttagatgagatgaaacgggtctcttctagcttaatcaaggt--cgggttcaaatccagccttgggcatgcagcag 167918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 16173 - 16065
Alignment:
Q  250 aaggttctaggttcgaattcagccttgggcat----gcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgaggga 345  Q
    |||||| ||||||||||| |||||||||||||    ||||||||||||| | || || ||||||  | ||| |||||||| || |||||| ||||| |||    
T  16173 aaggttttaggttcgaatccagccttgggcattcgtgcagcagtgttaatattcgtatggagagtttgccgtccatttgggtctcacaatgctcgacgga 16074  T
Q  346 ttagtctcc 354  Q
    |||||||||    
T  16073 ttagtctcc 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 360
Target Start/End: Original strand, 10973 - 11089
Alignment:
Q  244 ttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagg 343  Q
    |||| |||||| |||||||||||| ||   ||||||||||| || |||||||||||||| ||||||  | |||||||||| | |  ||||| ||||||      
T  10973 ttaactaaggtcctaggttcgaatccatttttgggcatgcaacaatgttaaaactcttacggagagtttgccgcccatttaggtttcacaaaactcgata 11072  T
Q  344 gattagtctccgcagtt 360  Q
    ||||| ||||| |||||    
T  11073 gattaatctccacagtt 11089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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