View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_14 (Length: 507)
Name: NF1863_low_14
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 2377535 - 2378023
Alignment:
| Q |
1 |
ttgaggaggagcagagaaggaagaaaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaagactcttgtgcagacac |
100 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
2377535 |
ttgaggaggaacagaaaaggaagaaaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaaga---tcgtgcagacac |
2377631 |
T |
|
| Q |
101 |
taataatagtacatatgatgagacattacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377632 |
taataatagtacatatgatgagacattacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagtt |
2377731 |
T |
|
| Q |
201 |
attgagaaaattatgagtgaaattgagaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377732 |
attgagaaaattatgagtgaaattgagaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattg |
2377831 |
T |
|
| Q |
301 |
ctcaggtaatttcactacaccgtcaccaaataataatcaatagaatatgtgactttaaaagtagttaggatgaaaactaaatatttttaatgatctcacg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377832 |
ctcaggtaatttcactacaccgtcaccaaataataatcaatagaatatgtgactttaaaagtagttaggatgaaaactaaatatttttaatgatctcacg |
2377931 |
T |
|
| Q |
401 |
attatgattgattgaatatggaannnnnnnncccgcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgaggaagat |
492 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377932 |
attatgattgattgaatatggaattttttttcccgcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgaggaagat |
2378023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 435 - 486
Target Start/End: Complemental strand, 36766511 - 36766460
Alignment:
| Q |
435 |
gcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgag |
486 |
Q |
| |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
36766511 |
gcaatttgcagatggatgtggaattttgcatgacagtgaaggatcttgtgag |
36766460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 310
Target Start/End: Complemental strand, 36766866 - 36766683
Alignment:
| Q |
127 |
tacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagttattgagaaaattatgagtgaaattga |
226 |
Q |
| |
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|||| ||||||||||||||||||||||| |||| ||||||||||||| | |||||| ||| | |||||||| | || |||| || ||||||| |
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| T |
36766866 |
taccagaaattgaagcaagattttgtgatagaaatgtcctcataagagttcattgtgagaaaatcaaaggagttgtggaaaaaacaatccacaaaattga |
36766767 |
T |
|
| Q |
227 |
gaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattgctcaggtaat |
310 |
Q |
| |
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|||||| |||||||||||| ||||||||||| | |||| ||||| | || | ||||||||||| || ||||| |||||||| |
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| T |
36766766 |
gaaactcaatctaaaagtcaccaatagcagtttcatgacatttggaagttgtgcacttgatataacaattattgcacaggtaat |
36766683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 415
Target Start/End: Original strand, 33817355 - 33817388
Alignment:
| Q |
382 |
tatttttaatgatctcacgattatgattgattga |
415 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
33817355 |
tatttttaatgatctaacgattatgattgattga |
33817388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 14004367 - 14004334
Alignment:
| Q |
382 |
tatttttaatgatctcacgattatgattgattga |
415 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
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| T |
14004367 |
tattttaaatgatctcacgattatgattgattga |
14004334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 15920245 - 15920274
Alignment:
| Q |
386 |
tttaatgatctcacgattatgattgattga |
415 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
15920245 |
tttaatgatctcacgattatgattgattga |
15920274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 4624512 - 4624548
Alignment:
| Q |
379 |
aaatatttttaatgatctcacgattatgattgattga |
415 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |
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| T |
4624512 |
aaatatttttgatgatctgacgattatgattgattga |
4624548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 49598485 - 49598417
Alignment:
| Q |
345 |
atatgtgactttaaaagtagttaggatgaaaactaaatatttttaatgatctcacgattatgattgatt |
413 |
Q |
| |
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||||||||||||||||||||||| ||| || |||| ||||||||| |||| | ||||||||||||| |
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| T |
49598485 |
atatgtgactttaaaagtagttacgattgaagttaaagatttttaataatctgataattatgattgatt |
49598417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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