View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_15 (Length: 492)
Name: NF1863_low_15
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_15 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 34 - 474
Target Start/End: Original strand, 18912400 - 18912842
Alignment:
| Q |
34 |
gtgacaccacggttatgatattaaagtttagattctactacaatacaaagtacaaaaattaaataagcatcgctttcaaaactagtttggaaatatttga |
133 |
Q |
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| T |
18912400 |
gtgacaccacggttatgatattatagtttagattctactacaatagaaagtacaaaaattaaataagcattgctttcaaaactagtttggaaatatttga |
18912499 |
T |
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| Q |
134 |
agtggtaatcaaagattaacaaagaataatatcaaatatatacaattatttgcaaaagcttttttatgcttacaaaacatggtaataggatgactcgnnn |
233 |
Q |
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| T |
18912500 |
agtggtaatcaaagataaacaaagaataatatcaaatatatacaattatttgcaaaagctttttcatgcttacaaaacatggtaataggataactcgttt |
18912599 |
T |
|
| Q |
234 |
nnnnn-agtttcagataggttc-actctactggaggtaatgctattcgagctgcgtcagacactaaaatgtgaatacctttccgaactgagatcgaacct |
331 |
Q |
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| T |
18912600 |
ttttttagtttcagataggttccactctactggaggtaatgctattcgaggtgcgtcagacactaaaatgtgaatacctttccgaactgagatcgaacct |
18912699 |
T |
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| Q |
332 |
tggttagtctagcctcttccactagacctaaaccttgttggttaacacaatttattctgtaagaaaatagttggtactcattccaaacctctgatcacaa |
431 |
Q |
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| T |
18912700 |
tggttagtctagcctctttcactaaacctaaaccttgttggttaacacaatttattctgtaagaaaatagttggtactcattccaaacctctgatcacaa |
18912799 |
T |
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| Q |
432 |
acatacacttagccaatttgaatgtgtatacagtacaaagtgc |
474 |
Q |
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| T |
18912800 |
acatacacttagccaatttgaatgtgtatacagtacaaagtgc |
18912842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 240 - 429
Target Start/End: Original strand, 18919804 - 18920008
Alignment:
| Q |
240 |
gtttcagataggttcactctactggaggtaatgctattcgagctgcgtcagacactaaaatgtgaatacctttccgaactgagatc-gaaccttggtt-- |
336 |
Q |
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| T |
18919804 |
gtttccgataggttccctctactggaggtaatcatatttgaggtgtgtcagacactaaaatgtggatacctttcccagctaagatttgaaccttggttct |
18919903 |
T |
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| Q |
337 |
------------agtctagcctcttccactagacctaaaccttgttggttaacacaatttattctgtaagaaaatagttggtactcattccaaacctctg |
424 |
Q |
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| T |
18919904 |
ccacgttgcgtgagtctagcctcttctgctagacccaaaccttgttggttaactcaattcattatattagaaaatagttgatatgcattccaaacctctg |
18920003 |
T |
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| Q |
425 |
atcac |
429 |
Q |
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|||| |
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| T |
18920004 |
ttcac |
18920008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 14750345 - 14750282
Alignment:
| Q |
361 |
aaaccttgttggttaacacaatttattctgtaagaaaatagttggtactcattccaaacctctg |
424 |
Q |
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| T |
14750345 |
aaaccttgttggttaactcaatttattctactaaaaaatagttggtactcattccaaagctctg |
14750282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 32577858 - 32577926
Alignment:
| Q |
256 |
ctctactggaggtaatgctattcgagctgcgtcagacactaaaatgtgaatacctttccgaactgagat |
324 |
Q |
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| T |
32577858 |
ctctactggaggtaatcctattcgaggtgcgtcaaacacttgaatgtggatacctttcctagctgagat |
32577926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 12733758 - 12733807
Alignment:
| Q |
256 |
ctctactggaggtaatgctattcgagctgcgtcagacactaaaatgtgaa |
305 |
Q |
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| T |
12733758 |
ctctactgaaagtaattctattcgagctgcgtcaaacactaaaacgtgaa |
12733807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 9012 - 8963
Alignment:
| Q |
256 |
ctctactggaggtaatgctattcgagctgcgtcagacactaaaatgtgaa |
305 |
Q |
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| T |
9012 |
ctctattggaagtaattctattcgagctgcgtcaaacactaaaacgtgaa |
8963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 19780477 - 19780420
Alignment:
| Q |
361 |
aaaccttgttggttaacacaatttattctgtaagaaaatagttggtactcattccaaa |
418 |
Q |
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| T |
19780477 |
aaaccttgttgattaactcaacttattctattagaaaacaattggtactcattccaaa |
19780420 |
T |
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