View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_17 (Length: 482)
Name: NF1863_low_17
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Original strand, 37027436 - 37027898
Alignment:
| Q |
16 |
cacatctttgcctcttgatgctagtttccactcttttccctttgtgtggtaaaccatgcatataaattatatgattatttcatatactaatctatctatg |
115 |
Q |
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| T |
37027436 |
cacatctttgcctcttgatgctagtttccactcttttccctttgtgtggtaaaccatgcatataaattatatgattatttcatatactaatctatctatg |
37027535 |
T |
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| Q |
116 |
taactttagttt-----gtgtaataatttataaaacatatgtaacttttgttaaatttgcagatgctataaatcatggaagaggtagtagaagctactcc |
210 |
Q |
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| T |
37027536 |
taacttcagtttaatttgtgtagtaattaataaaacatatgtaacttttgttaaatttgcagatgctataaatcatggaagaggtagtagaagctactcc |
37027635 |
T |
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| Q |
211 |
atcaaatcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccacttccacctttcaatt |
310 |
Q |
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| T |
37027636 |
atcaaatcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccacttccacctttcaatt |
37027735 |
T |
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| Q |
311 |
cacttgctccacaacctacctctctaccaccttattcacctgttccaaacccacctcatgatgtttttagaccaccaccaagtcctaaaaccgttgtcac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
37027736 |
cacttgctccacaacctacctctctaccaccttattcacctgttccaaacccacctcatgatgtttttagaccaccaccaagtcctaaaaccattgttac |
37027835 |
T |
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| Q |
411 |
aatatcgccgccgccacctccaagccaatcaaaacatgttccaagcccacctaaaagtattat |
473 |
Q |
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| T |
37027836 |
aatgtcgccgccgccacctccaagcccatcaaaacatgttccaagcccacctaaaagtgttat |
37027898 |
T |
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