View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_low_19 (Length: 453)
Name: NF1863_low_19
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Original strand, 28025002 - 28025428
Alignment:
| Q |
10 |
aagaatatgaataatctattgtcttagaacttgtcaattttcgtcataatataaaatgtcataatggacggnnnnnnngtaattaagatggaataaaccc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
28025002 |
aagaaaatgaataatctattgtcttagaacttgtcaattttcgtcataatataaaatgtcataatgaacggaaaaaaagtaattaagatggaataaaccc |
28025101 |
T |
|
| Q |
110 |
atccttaaactatataaataaaccaaccagcccctaacctatgtaaatttcaccaattcagtccttaaagtatattaatattaaaatccgtcaatctagt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28025102 |
atccttaaactatataaataaaccaaccagcccctaacctatgtaaatttcaccaattcagtccttaaagtatattaatattaaaatccgtcaatttagt |
28025201 |
T |
|
| Q |
210 |
cccttactacttaatagtagagacaaaattgatggattttgtttagtttaaggactacttaatatatttctatagtttatcgactaaatttataggtgtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
28025202 |
cccttactacttaatagtagagacaaaattgatggattttgtttagtttaaggactacttggtatatttctaaggtttatcgactaaatttatagttgtt |
28025301 |
T |
|
| Q |
310 |
cgattaagatgtatggaagtatctgattctaataagcaaagcaaaccaacatttgtgttggtttaaataaaacttaaacacaaacttagacaaatcaaac |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28025302 |
cgattaagatgtatggaagtatctgattctaataagcaaagcaaaccaacatttgtgttggtttaaataaaacttaaacataaacttagacaaatcaaac |
28025401 |
T |
|
| Q |
410 |
aattataaagtacaaagggttcatggt |
436 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
28025402 |
aattataaagtacaaagggttcatggt |
28025428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 35504411 - 35504455
Alignment:
| Q |
239 |
tgatggattttgtttagtttaaggactacttaatatatttctata |
283 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
35504411 |
tgatgaattttgtctagtttaaagactacttaatatatttctata |
35504455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 47232635 - 47232567
Alignment:
| Q |
231 |
gacaaaattgatggattttgtttagtttaaggactacttaatatatttctatagtttatcgactaaatt |
299 |
Q |
| |
|
|||| |||||||| |||| | ||||||| |||||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
47232635 |
gacataattgatgaatttcatatagtttagggactatttaatatatttaaatagtttatggactaaatt |
47232567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 29803438 - 29803403
Alignment:
| Q |
253 |
tagtttaaggactacttaatatatttctatagttta |
288 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29803438 |
tagtttaaggactacttagtatatttctatagttta |
29803403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University