View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_23 (Length: 442)
Name: NF1863_low_23
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 10398146 - 10398567
Alignment:
| Q |
1 |
gcagctgaagaacgtgaattggtaatagacctatgatgttgttggtgatgatttggtgtgtgtctgtatctggacgaaacagaaattgttggagtatcag |
100 |
Q |
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| T |
10398146 |
gcagctgaagaacgtgaattgctaatagacctatgatgttgttggtgatgatttggtgtgtgtctgtatctggacgaaacagaaattgttggagtatcag |
10398245 |
T |
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| Q |
101 |
gtctagaagcacaaggagtggaagtagaattgattctttcaattctcgaagttgttgatttaggagggtgatgagaatgagaatgaaaattagggttaga |
200 |
Q |
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| T |
10398246 |
gtctagaagcacaaggagtggaagtagaattgattctttcaattctcgaagttgttgatttaggagggtgatgagaatgagaatgaaaattagggttagg |
10398345 |
T |
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| Q |
201 |
gtttggtgtattttcgaaaaccctattatttgtggattctttgaaaagtttaatagctctttgttgtaattgttttctctgaaaagaataaccgatgggg |
300 |
Q |
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| T |
10398346 |
gtttggtgtattttcgaaaaccctattatttgtggattctttgaaaagtttaatagctctttgttgtaattgttttttctgaaaagaataaccgatgggg |
10398445 |
T |
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| Q |
301 |
attgaagattcagaattttcgtcgtcggaatcgtcacgttgttggcgtcggtgagtggtggaggcggagggggtcatgaatcgcgagctgacttcacggg |
400 |
Q |
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| T |
10398446 |
aatgaagattcagaattttcgtcgtcggaatcgtcacgttgttggcgtcggtgagtggtggaggcggagggggtcatgaatcgagagctgacttcacggg |
10398545 |
T |
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| Q |
401 |
ttctaggtcggcggttgtttgt |
422 |
Q |
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| T |
10398546 |
ttctaggtcggcggttgtttgt |
10398567 |
T |
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