View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_low_26 (Length: 433)

Name: NF1863_low_26
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_low_26
NF1863_low_26
[»] chr2 (11 HSPs)
chr2 (1-418)||(10464779-10465196)
chr2 (113-181)||(10476215-10476283)
chr2 (10-67)||(7478921-7478978)
chr2 (153-208)||(4026732-4026787)
chr2 (2-68)||(10476058-10476124)
chr2 (10-75)||(10508993-10509058)
chr2 (108-164)||(10490458-10490514)
chr2 (2-66)||(10494377-10494441)
chr2 (119-164)||(10494535-10494580)
chr2 (159-208)||(42420394-42420443)
chr2 (159-208)||(44589956-44590005)
[»] chr6 (1 HSPs)
chr6 (161-203)||(35069475-35069517)
[»] chr4 (3 HSPs)
chr4 (159-213)||(21731748-21731802)
chr4 (164-199)||(1706548-1706583)
chr4 (164-199)||(44863071-44863106)
[»] chr5 (4 HSPs)
chr5 (161-208)||(14675000-14675047)
chr5 (160-203)||(42099965-42100008)
chr5 (160-197)||(28776897-28776934)
chr5 (159-208)||(42569080-42569129)
[»] chr1 (1 HSPs)
chr1 (159-208)||(15942254-15942303)


Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 10464779 - 10465196
Alignment:
Q  1 cgcattctgaacctcaggagtgaaatcaacatgattaggtgtgtcaattacagtcatctgcaaggacagacaaatattaaatttcaattccatttcatga 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  10464779 cgcattctgaacctcaggagtgaaatcaacatgatcaggtgtgtcaattacagtcatctgcaaggacagacaaatattaaatttatattccatttcatga 10464878  T
Q  101 ataatgcaaaccaagaacattattgagttttgtataaacagcttatagtgtttttgcagcttatcatgataagtgcttatgcagaagctatttttatagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10464879 ataatgcaaaccaagaacattattgagttttgtataaacagcttatagtgtttttgcagcttatcatgataagtgcttatgcagaagctatttttatagc 10464978  T
Q  201 aaatgatacagtaccttatagttatccctccagtcaaagaaagtgagatctgcggggatagaatcggacttgggattgaacacccagttgagaactgtgc 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10464979 aaatgatgcagtaccttatagttatccctccagtcaaagaaagtgagatctgcggggatagaatcggacttgggattgaacacccagttgagaactgtgc 10465078  T
Q  301 ggctaataactccttttcccaaacctagcttcagccatgactcttgtttaatataggactcagtgttcttgtctttcttctcaatttcacacctagcatc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  10465079 ggctaataactccttttcccaaacctagcttcagccatgactcttgtttaatataagactcagtgttgttgtctttcttctcaatttcacacctagcatc 10465178  T
Q  401 ctccatcttatcgatctc 418  Q
    ||||||||||||||||||    
T  10465179 ctccatcttatcgatctc 10465196  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 10476215 - 10476283
Alignment:
Q  113 aagaacattattgagttttgtataaacagcttatagtgtttttgcagcttatcatgataagtgcttatg 181  Q
    ||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  10476215 aagaatattactgacttttgtataagcagcttatagtgtttttgcagcttatcatgataagcgcttatg 10476283  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 7478978 - 7478921
Alignment:
Q  10 aacctcaggagtgaaatcaacatgattaggtgtgtcaattacagtcatctgcaaggac 67  Q
    |||||||| ||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  7478978 aacctcagcagtgaaatcaacatgaacaggtgtgtcaatcacagtcatctgcaaggac 7478921  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 4026732 - 4026787
Alignment:
Q  153 tttgcagcttatcatgataagtgcttatgcagaagctatttttatagcaaatgata 208  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||    
T  4026732 tttgcagcttatcatgataagtgcttatctataagctatttttatagcaaaagata 4026787  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 10476058 - 10476124
Alignment:
Q  2 gcattctgaacctcaggagtgaaatcaacatgattaggtgtgtcaattacagtcatctgcaaggaca 68  Q
    |||||||||||||||| |||||||||||||| || |||||||||||  ||| |||||||||| ||||    
T  10476058 gcattctgaacctcagcagtgaaatcaacattatcaggtgtgtcaagcacactcatctgcaatgaca 10476124  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 10508993 - 10509058
Alignment:
Q  10 aacctcaggagtgaaatcaacatgattaggtgtgtcaattacagtcatctgcaaggacagacaaat 75  Q
    ||||||||||||||||||||||  |  |||||||||||||||  ||||||||||||||||| ||||    
T  10508993 aacctcaggagtgaaatcaacacaagcaggtgtgtcaattacgctcatctgcaaggacagaaaaat 10509058  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 10490458 - 10490514
Alignment:
Q  108 aaaccaagaacattattgagttttgtataaacagcttatagtgtttttgcagcttat 164  Q
    |||||||||| |||||||| |||||||||||||||||||||  ||||||||| ||||    
T  10490458 aaaccaagaatattattgacttttgtataaacagcttatagcatttttgcagtttat 10490514  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 10494377 - 10494441
Alignment:
Q  2 gcattctgaacctcaggagtgaaatcaacatgattaggtgtgtcaattacagtcatctgcaagga 66  Q
    ||||||| |||||||| ||||||||||||| ||  |||||||||||| || ||||||||||||||    
T  10494377 gcattcttaacctcagtagtgaaatcaacacgagcaggtgtgtcaatcacggtcatctgcaagga 10494441  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 10494535 - 10494580
Alignment:
Q  119 attattgagttttgtataaacagcttatagtgtttttgcagcttat 164  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||    
T  10494535 attatggacttttgtataaacagcttatagtgtttttgcagtttat 10494580  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 42420443 - 42420394
Alignment:
Q  159 gcttatcatgataagtgcttatgcagaagctatttttatagcaaatgata 208  Q
    ||||||||||||||| ||||| | | ||||||||||||||||||| ||||    
T  42420443 gcttatcatgataagcgcttacgtataagctatttttatagcaaaagata 42420394  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 44589956 - 44590005
Alignment:
Q  159 gcttatcatgataagtgcttatgcagaagctatttttatagcaaatgata 208  Q
    ||||||||||||||||||||||| | ||| | ||| ||||||||||||||    
T  44589956 gcttatcatgataagtgcttatgtataagttgtttctatagcaaatgata 44590005  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 35069475 - 35069517
Alignment:
Q  161 ttatcatgataagtgcttatgcagaagctatttttatagcaaa 203  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  35069475 ttatcatgataagtgcttatgcataagctatttatatagcaaa 35069517  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 21731802 - 21731748
Alignment:
Q  159 gcttatcatgataagtgcttatgcagaagctatttttatagcaaatgatacagta 213  Q
    ||||||||||||||||||||| | | ||||||||||||||||||| |||| ||||    
T  21731802 gcttatcatgataagtgcttacgtataagctatttttatagcaaaagataaagta 21731748  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 1706548 - 1706583
Alignment:
Q  164 tcatgataagtgcttatgcagaagctatttttatag 199  Q
    |||||||||||||||||| |||||||||||||||||    
T  1706548 tcatgataagtgcttatgtagaagctatttttatag 1706583  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 44863106 - 44863071
Alignment:
Q  164 tcatgataagtgcttatgcagaagctatttttatag 199  Q
    |||||||||||||||||||| |||||||||||||||    
T  44863106 tcatgataagtgcttatgcataagctatttttatag 44863071  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 14675047 - 14675000
Alignment:
Q  161 ttatcatgataagtgcttatgcagaagctatttttatagcaaatgata 208  Q
    ||||||||||||||||||||| ||||||||||| |||| ||| |||||    
T  14675047 ttatcatgataagtgcttatgtagaagctatttctataacaagtgata 14675000  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 42100008 - 42099965
Alignment:
Q  160 cttatcatgataagtgcttatgcagaagctatttttatagcaaa 203  Q
    |||||||||||||||||||||| | ||||||||| |||||||||    
T  42100008 cttatcatgataagtgcttatgtataagctatttatatagcaaa 42099965  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 28776897 - 28776934
Alignment:
Q  160 cttatcatgataagtgcttatgcagaagctatttttat 197  Q
    |||||||||||||||||||||| | |||||||||||||    
T  28776897 cttatcatgataagtgcttatgtataagctatttttat 28776934  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 42569129 - 42569080
Alignment:
Q  159 gcttatcatgataagtgcttatgcagaagctatttttatagcaaatgata 208  Q
    ||||||||||||||| ||||||| | ||||||||| ||||||||| ||||    
T  42569129 gcttatcatgataagcgcttatgaaaaagctatttctatagcaaaagata 42569080  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 15942254 - 15942303
Alignment:
Q  159 gcttatcatgataagtgcttatgcagaagctatttttatagcaaatgata 208  Q
    ||||||||||||||||||||||| | ||||||||| ||||| ||| ||||    
T  15942254 gcttatcatgataagtgcttatgtataagctatttatatagaaaaagata 15942303  T

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