View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_3 (Length: 794)
Name: NF1863_low_3
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_3 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 199 - 565
Target Start/End: Original strand, 1961604 - 1961948
Alignment:
| Q |
199 |
taattttaaatgaattacggaagcgacgattttgaaattcatgctatatgcaaattgaaattctcaccaagagaacagggaaaactgaggtgtctgtaac |
298 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961604 |
taattttaaatgaattacggtagcgacgatt--gaaattcatgctatatgcaaattgaaattctcaccaagagaacagggaaaactgaggtgtctgtaac |
1961701 |
T |
|
| Q |
299 |
ttcttcaaagtagaatgtatgtcccaaacttactgtatttacaaggtgatctactgcactcacacaaacaaaattttctttaataatttgaagagtcatg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961702 |
ttcttcaaagtagaatgtatgtcccaaacttactgtatttacaaggtgatctactgcactcacacaaacaaaattttctttaataatttgaagagtcatg |
1961801 |
T |
|
| Q |
399 |
gtgatataatttaaatgtgcaatcaaattaaactaataatgtatacaattacagtataaactttagctagaccttagtgcaataagcttaatgtttgaat |
498 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961802 |
gtgatataatttaaatgtgcaatcaaactaaactaataatgtatacaattacagtataaactttagctagaccttagtgcaataagc------------- |
1961888 |
T |
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| Q |
499 |
taacagcttaattaatagattacaacttgtgctcttatcatataagtgcctatatataagctatttt |
565 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961889 |
-------ttaattaatcgattacaacttgtgctcttatcatataagtgcctatatataagctatttt |
1961948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 576 - 786
Target Start/End: Original strand, 1961998 - 1962208
Alignment:
| Q |
576 |
ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaagaaacataccacgaccaaagacatttatggttt |
675 |
Q |
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| T |
1961998 |
ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaagaaacataccacgaccaaagacatttatggttt |
1962097 |
T |
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| Q |
676 |
cattaacaaatcttctacaatcatcttccttgacaacatctgctgccataatcataacatgtcttgctcccattctccttgcattctcagcaattcctat |
775 |
Q |
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| T |
1962098 |
cattaacaaatcttctacaatcatcttccttgacaacatctgctgccataatcataacatgtcttgctcccattctccttgcattctcagcaattcctat |
1962197 |
T |
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| Q |
776 |
tagcctatgct |
786 |
Q |
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||||||||||| |
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| T |
1962198 |
tagcctatgct |
1962208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 1961399 - 1961582
Alignment:
| Q |
18 |
gtacttacaccaaacaaactcatccttggcaaaggtaaccaactctcaactgatgcattgataataacgcggccattgctttggtgaaggtaaggaagag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1961399 |
gtacttacaccaaacaaactcatccttggcaaaggtaaccaactctcaactgatgcattgataataacacggccattgctttggtgaaggtaaggaagag |
1961498 |
T |
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| Q |
118 |
ccaccaacgttggataaacattcccccaaaaattaatatcctaaaaagaccacattatctcataataatatgatcaagcaataa |
201 |
Q |
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| T |
1961499 |
ccaccaaagttggataaacattcccccaaaaattaatatcctaaaaagaccacattatctcataataatatgatcaagcaataa |
1961582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 642
Target Start/End: Original strand, 54258683 - 54258736
Alignment:
| Q |
589 |
aacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaa |
642 |
Q |
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|||| ||||||||||||||||||||||| ||||||| ||||| | ||||||||| |
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| T |
54258683 |
aacaatctcacaagtgtttatatgagtaaataaactaaaataagttgatccaaa |
54258736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 564
Target Start/End: Original strand, 4897 - 4927
Alignment:
| Q |
534 |
tatcatataagtgcctatatataagctattt |
564 |
Q |
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| T |
4897 |
tatcatataagtgcctatatataagctattt |
4927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 630
Target Start/End: Original strand, 41170693 - 41170747
Alignment:
| Q |
576 |
ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaata |
630 |
Q |
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| T |
41170693 |
ataagttattccaaatagtctcacaagtgtttatgttagtagataaactcaaata |
41170747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 630
Target Start/End: Original strand, 4661356 - 4661397
Alignment:
| Q |
589 |
aacattctcacaagtgtttatatgagtagataaactcaaata |
630 |
Q |
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|||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
4661356 |
aacaatcttacaagagtttatatgagtagataaactcaaata |
4661397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 642
Target Start/End: Complemental strand, 32515428 - 32515362
Alignment:
| Q |
576 |
ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaa |
642 |
Q |
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||||||| | || |||| ||||||||||| |||| | |||||||||||||||||||| | ||||||| |
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| T |
32515428 |
ataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaaa |
32515362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 585
Target Start/End: Original strand, 28844477 - 28844506
Alignment:
| Q |
556 |
aagctattttcatataagctataagctatt |
585 |
Q |
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| T |
28844477 |
aagctattttcatataagctataagctatt |
28844506 |
T |
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