View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_low_35 (Length: 404)
Name: NF1863_low_35
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 49282113 - 49282499
Alignment:
| Q |
1 |
gcatgggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcatgtacctttggctacttgaaactagaaaaccacccttccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49282113 |
gcatgggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcatgtacctttggctacttgaaactagaaaaccacccttccc |
49282212 |
T |
|
| Q |
101 |
atttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaattta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49282213 |
atttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcagactctagagtgtgctaacatgttggacgtcccatttaattta |
49282312 |
T |
|
| Q |
201 |
gaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaatgattaaaatcaagccaaacgagagatgttctcct |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49282313 |
gaatcacaatgatatcttttatggcagtgtttacaagcggctgtaggttctggttcattggataatggataaaatcaagccaaacgagagatgttctcct |
49282412 |
T |
|
| Q |
301 |
attaccattggcattaggtctcctacacctagtagtgggtaaggggggagctcagcaactgcttgttgaatagattcagctgaaaag |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
49282413 |
attaccattggcattaggtctcctacacctagtagtgggtaaggggggagcttagcagctgcttgttgagtagattcagctgaaaag |
49282499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 83 - 386
Target Start/End: Complemental strand, 13786564 - 13786259
Alignment:
| Q |
83 |
tagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||||||||||||| || |
|
|
| T |
13786564 |
tagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctgatttcttaaggtagactctacagtgtgctaacatgctg |
13786465 |
T |
|
| Q |
183 |
gacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaat-gattaaaatcaagcc |
281 |
Q |
| |
|
||| |||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
13786464 |
gacttcccatttaatttagaatcacaacgatatcttttatggcagtgtttacaagcggttgtaggttctcgttcattgggtaatggattaaaatcaagcc |
13786365 |
T |
|
| Q |
282 |
aaacgagagatgttctcctattaccattggcattaggtctcctacacctagtagtggg-taaggggggagctcagcaactgcttgttgaatagattcagc |
380 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
13786364 |
aaacggaagaggttctcctattaccattggcattaggtctcttacacctagtagtgggaaaaggggggagctcagcagctgcttgttgagtagattcagc |
13786265 |
T |
|
| Q |
381 |
tgaaaa |
386 |
Q |
| |
|
|||||| |
|
|
| T |
13786264 |
tgaaaa |
13786259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 42 - 336
Target Start/End: Complemental strand, 13786860 - 13786564
Alignment:
| Q |
42 |
atccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttc |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13786860 |
atccctacaatcttttgcattgtacctttggctaactgaaactagaaaatcacccttcccatttataagatttgtttgcctagggtcatttagcatgttc |
13786761 |
T |
|
| Q |
141 |
tctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcgg |
240 |
Q |
| |
|
||||||||||||||| | |||||| |||||||||||||| ||||| |||| |||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
13786760 |
tctggtttcttaaggtagactctacagtgtgctaacatgctggacttcccatttaatttagaatcacaacgatatcttttatggcagtgtttacaagcgg |
13786661 |
T |
|
| Q |
241 |
ctgtaggttctggttcattgggtaat-gattaaaatcaagccaaacgagagatgttctcctattaccattggcattaggtctcctacacctagtagt |
336 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13786660 |
ttgtaggttctcattcattgggtaatggattaaaatcaagccaaacgggagaggttctcctattaccattggcattaggtctcttacacctagtagt |
13786564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 13935733 - 13935346
Alignment:
| Q |
1 |
gcatgggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcc |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13935733 |
gcatgggcatgttcgtcaaggataacaaagttggttacgacatcactataatcttttgcattgtacctttggctagctgaaactagaaaaccacccttcc |
13935634 |
T |
|
| Q |
100 |
catttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaattt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
13935633 |
catttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcagactctagagtgtgctaacatgttggacgttccatttaattt |
13935534 |
T |
|
| Q |
200 |
agaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaat-gattaaaatcaagccaaacgagagatgttctc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
13935533 |
agaatcacaatggtatcttttatggcagtgtttacacgcggctgtaggttctggttcattgggtaatggattaaaatcaagccaaacgggagaggttctc |
13935434 |
T |
|
| Q |
299 |
ctattaccattggcattaggtctcctacacctagtagtgggtaaggggggagctcagcaactgcttgttgaatagattcagctgaaaag |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
13935433 |
ctattaccattggcattaggtctcctacacccagtagtgggtaa-gggggagctcagcagctgcttggtgagtagattcagctgaaaag |
13935346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 10397227 - 10397314
Alignment:
| Q |
171 |
gctaacatgttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcat |
258 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| ||||| | |||||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
10397227 |
gctaacatgttggatgtcctgtttaatttagaatcacaatgatatctatcatggcagtgtttacaagcggttgtaagttctagttcat |
10397314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 330
Target Start/End: Complemental strand, 7285049 - 7284881
Alignment:
| Q |
163 |
tagagtgtgctaacatgttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattggg |
262 |
Q |
| |
|
||||||||||||||||| |||| ||||| | | ||||||||||||| | |||| | |||| || ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
7285049 |
tagagtgtgctaacatgctggatgtcccatgtgctttagaatcacaacgatatcgtctatgacaatgtttacaagctgctttaggttctggttcattgga |
7284950 |
T |
|
| Q |
263 |
ta-atgattaaaatcaagccaaacgagagatgttctcctattaccattggcattaggtctcctacacct |
330 |
Q |
| |
|
|| | | |||||||| ||||||| | | ||||||||||| ||| | ||||||||||| |||||||| |
|
|
| T |
7284949 |
tagagggttaaaatctagccaaatagggcaggttctcctattgccactagcattaggtcttctacacct |
7284881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 13307093 - 13306705
Alignment:
| Q |
7 |
gcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccattta |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13307093 |
gcatgttcgtcaaggataacaaagttggttacagcatccctacaatcttttgcattgtacctttggctagctgaaactagaaaaccacccttcccattta |
13306994 |
T |
|
| Q |
106 |
taagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaatttagaatc |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13306993 |
taagatttttttgcctagggtcatttagcatgttctctggtttcttaaggcagactctacagtgtgctaacatgttggacgtcccatttaatttagaatc |
13306894 |
T |
|
| Q |
206 |
acaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaat-gattaaaatcaagccaaacgagagatgttctcctatta |
304 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
13306893 |
acaacggtatcttttatggcagtgtttacaagcggctgtatgttctggttcatcgggtaatggattaaaatcaagccaaacgggagaggttctcctatta |
13306794 |
T |
|
| Q |
305 |
ccattggcattaggtctcctacacctagtagtgggtaa-------ggggggagctcagcaactgcttgttgaatagattcagctgaaaa |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
13306793 |
ccattggcattaggtctcctacacctagtagtgggtaagggggggggggggagctcagcagctacttgttgagtagattcagctgaaaa |
13306705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 14596783 - 14597145
Alignment:
| Q |
7 |
gcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccattta |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14596783 |
gcatgttcgtcaaggataacaaagttggttacggcatccctacagtcttttgcattgtacctttggctagctgaaactagaaaaccacccttcccattta |
14596882 |
T |
|
| Q |
106 |
taagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaatttagaatc |
205 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
14596883 |
taagatttgtttgcctaggtacatttagcatgttctctggtttcttaaggcagactctaaagcgtgttaacatgttggacgtcccatttaatttagaatc |
14596982 |
T |
|
| Q |
206 |
acaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaat-gattaaaatcaagccaaacgagagatgttctcctatta |
304 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
14596983 |
acaatggcatcttttatggcagtgtttacaagcggctgtaggttctggtttattgggtaatggattaaaatcaagccaaacgggagaggttctcctatta |
14597082 |
T |
|
| Q |
305 |
ccattggcattaggtctcctacacctagtagtgggtaa-ggggggagctcagcaactgcttgt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
14597083 |
ccattggcattaggtctcctacacctagtagtgggtaagggggggagctcagcagctgcttgt |
14597145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 335
Target Start/End: Original strand, 6839300 - 6839631
Alignment:
| Q |
6 |
ggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccattt |
104 |
Q |
| |
|
||||||||| |||||| | |||||||| |||| || | |||||| ||| |||||| |||||||||| | | |||||| ||||||||||| ||| || |
|
|
| T |
6839300 |
ggcatgttcatcaaggatgacaaagtttgttaaagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccactt |
6839399 |
T |
|
| Q |
105 |
ataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaatttagaat |
204 |
Q |
| |
|
| ||| |||| |||||||| ||| |||| |||||| ||||| | ||| || | | ||| ||||||||||||| | || ||||| | | |||||||| |
|
|
| T |
6839400 |
acaaggtttgattgcctagtgtcttttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatgctagatgtcccatgtgctttagaat |
6839499 |
T |
|
| Q |
205 |
cacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggt-aatgattaaaatcaagccaaacgagagatgttctcctatt |
303 |
Q |
| |
|
||| | |||| ||||||||| ||||||||| | ||| |||||||||||||||||||| || | |||||||| | |||||| |||| ||||||||||| |
|
|
| T |
6839500 |
gacagcgatatcgtttatggcaatgtttacaaactgctataggttctggttcattgggtaaagggttaaaatctaaccaaacaggagaggttctcctatt |
6839599 |
T |
|
| Q |
304 |
accattggcattaggtctcctacacctagtag |
335 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||| |
|
|
| T |
6839600 |
accattagcattaggtcttctacccctagtag |
6839631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 335
Target Start/End: Complemental strand, 15999426 - 15999170
Alignment:
| Q |
80 |
aactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatg |
179 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||| |||| ||||||||||| |||| |||||| ||||| | ||| || | | ||| ||||||||||||| |
|
|
| T |
15999426 |
aactagcaaaccaccctttccacttacaaggtttgattgcctagggtattttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatg |
15999327 |
T |
|
| Q |
180 |
ttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggt-aatgattaaaatcaa |
278 |
Q |
| |
|
|||| ||||| | | |||||||| ||| || |||| ||||||||| ||||||||||| ||| ||||||||||||||||| | || | ||||||| | |
|
|
| T |
15999326 |
ctggatgtcccatgtgctttagaatgacagtgatatcgtttatggcaatgtttacaagctgctacaggttctggttcattggataaagggttaaaatgta |
15999227 |
T |
|
| Q |
279 |
gccaaacgagagatgttctcctattaccattggcattaggtctcctacacctagtag |
335 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
15999226 |
accaaacaggagaggttctcctattaccattagcattaggtcttctacccctagtag |
15999170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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