View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_38 (Length: 389)
Name: NF1863_low_38
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 35940376 - 35940018
Alignment:
| Q |
15 |
caaaggtttccatggatttagcatcctcaggaatgagttgatggagaaggcacacaaaagaaacatattgaccacgattgagagagtctccaacaaacat |
114 |
Q |
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| T |
35940376 |
caaaggtttccatggatttagcatcctcgggaatgagttgatggagaaggcacacaaaagaaacatattgaccacgattgagagagtctccaacaaacat |
35940277 |
T |
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| Q |
115 |
catcctctttccacggagtgtttcaagcatcaagctagcattgaatctgcatttttgtcacacaaaaatcatcttttatagctacaaacttgaataagaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35940276 |
catcctctttccacggagtgtttcaagcatcaagctagcattgaatctgcatttttgtcacacaaaaatcatcttttatagctacaaacttgaataagaa |
35940177 |
T |
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| Q |
215 |
gcaaacaaaataaataaacacttacttaggaagatcgcaaccgtgtggttgccacctccaatgttggtaatctttgtcgggtctcccatgttcttggcaa |
314 |
Q |
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| T |
35940176 |
gtaaacaaaataaataaacacttacttaggaagatcgcaaccgtgtggttgccacctccaatgttggtaatctttgtcgggtctcccatgttcttggcaa |
35940077 |
T |
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| Q |
315 |
gtcaattgtggttgtatgtacggacactcagattcctcgtacaacggtcgagtatcctc |
373 |
Q |
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| T |
35940076 |
gtcaattgtggttgtatgtacggacactctgattcctcgtacaacggtcgagtatcctc |
35940018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 32181637 - 32181483
Alignment:
| Q |
9 |
gagaagcaaaggtttccatggatttagcatcctcaggaatgagttgatggagaaggcacacaaaagaaacatattgaccacgattgagagagtctccaac |
108 |
Q |
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| T |
32181637 |
gagaatcaaaggtttccatcgatttggcatgttggggaatgagatgatggagaagacatatcaaagagacatactgaccccgattgagagagtccccgac |
32181538 |
T |
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| Q |
109 |
aaacatcatcctctttccacggagtgtttcaagcatcaagctagcattgaatctg |
163 |
Q |
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| T |
32181537 |
aaacatcatcctcttcccacgaagtgtttctagcattaagctggcattgaatctg |
32181483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 32178925 - 32178811
Alignment:
| Q |
235 |
cttacttaggaagatcgcaaccgtgtggttgccacctccaatgttggtaatctttgtcgggtctcccatgttcttggcaagtcaattgtggttgtatgta |
334 |
Q |
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| T |
32178925 |
cttacttgggaagatcgcaaccgtgaggctgccaccgcaaccggcggtactctttatccggccggccatgttcttgacaagtcaactgtggttgtatata |
32178826 |
T |
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| Q |
335 |
cggacactcagattc |
349 |
Q |
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| T |
32178825 |
cggacactcagattc |
32178811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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