View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_4 (Length: 792)
Name: NF1863_low_4
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 80 - 775
Target Start/End: Complemental strand, 54238564 - 54237873
Alignment:
| Q |
80 |
ttacaggcacgaaaactttctcaccagtaatattatgttcttcatcaaatccaaccttcctattatttccttccttcccttcaaactcaattttctccaa |
179 |
Q |
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| T |
54238564 |
ttacaggcacgaaaactttctcaccagtaatattatgttcttcatcaaatccaaccttcctattatttccttcc----cttcaaactcaattttctccaa |
54238469 |
T |
|
| Q |
180 |
gaatcttgcatttgtgnnnnnnnn-gttaatcaaatgcgtttttatttaaaaacccatggttagtttagtggcgtaggtttgtgacctcgaaaatgtgtg |
278 |
Q |
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| T |
54238468 |
gaatcttgcatttgtgaaaaaaaaagttaattaaatgcatttttatttaaaaacccatggttagtttagtggcgtaggtttgtgatctcgaaa-tgtgtg |
54238370 |
T |
|
| Q |
279 |
tttttctttaggtctctggttcaaatttttctaatgctaacaatttatatgttgggtcatcattcgttaatagacggagaaagtagttttcggattaatc |
378 |
Q |
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| T |
54238369 |
tttttctttagatctctggttcaaatttttctaatgctaacaatttatatgttgggtcatcattcgttaatagacgaagaaattagttttcgaattaatc |
54238270 |
T |
|
| Q |
379 |
ggtgtttaaaccatacatcgaatttcatgaaaaaagtgcctttagtccctataaaatcatgatatttcaaatttagtttataaataaataaatttgatag |
478 |
Q |
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| T |
54238269 |
gatgtttaaaccatacatcgaatttcatgaaaaaagtgcctttagtccctataaaatcatgatatttcaaatttagtttataaataaataaatttgatag |
54238170 |
T |
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| Q |
479 |
ttcctatttcatttttatatgacgtatttaggattttgcataaatagaattttgatcataatatatatttgagaattactttttccaccgtcatgactgc |
578 |
Q |
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| T |
54238169 |
ttcctatttaatttttatatgacgtatttaggattttgcataaatagaattttgatcataatatatatttgagaattactttttccaccgtcatgactgc |
54238070 |
T |
|
| Q |
579 |
tcgttcgccttacaacatttcagattaagattatagaattcattgtgtaaaagcacattaaaaacaccttctaaataatagtctaaaacttttcaaattt |
678 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
54238069 |
tcgttcgccttacaacatttaagattaagattatagaattcattgtgtaaaagcacattaaaaacaccttctaaataatactctaaaacttttcagattt |
54237970 |
T |
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| Q |
679 |
tataatccgaaccattagtttgaaatcagaaacaagtaacgagtaggagtcgaagttaaatggaggtaggcccatgaataactagcccagctcttta |
775 |
Q |
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| T |
54237969 |
tataatccgaaccattagtttgaaatcagaaacaagtaacgagtaggagtcgaagttaaatggaggtaggcccatgaataactagcccagctcttta |
54237873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 54238635 - 54238589
Alignment:
| Q |
12 |
ataatactgtggcggaataataaattatgtgtgaatgctatataatc |
58 |
Q |
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| T |
54238635 |
ataatactgtggcggaataataaattatgtgtgaatgctatataatc |
54238589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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