View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_41 (Length: 375)
Name: NF1863_low_41
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 183 - 359
Target Start/End: Complemental strand, 5128532 - 5128356
Alignment:
| Q |
183 |
tgtctctgatacgctgaactcaccaccttgtttgctgacattgagtactaagagaaatctattcatgggtatctttcatttctatcagagagaatatgaa |
282 |
Q |
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| T |
5128532 |
tgtctctgatacgctgaactcaccaccttgtttgctgacattgagtacttagagaaatctattcatgagtatctttcatttctatcagagagaatatgaa |
5128433 |
T |
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| Q |
283 |
gagtataaagtcagagttaatgctttggttgctaaggctcagaaaacaccagatgaagggtggactatgcaagatgg |
359 |
Q |
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| T |
5128432 |
gagtataaagtcagagttaatgctttggttgctaaggctcagaaaacaccagatgaagggtggactatgcaagatgg |
5128356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 5128669 - 5128576
Alignment:
| Q |
12 |
agagcaatgaaagtaagcaactgaacttaaaaagtcttttctgtagtactgaattgtttaatcatttcatataaaaatgaattgtacggtcatgt |
106 |
Q |
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| T |
5128669 |
agagcaatgaaagtaagcaactgaacttaaaaagtcttttctgtagtactgaattgtttaatcatttcatat-aaaatgaattgtacggtcatgt |
5128576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 35926647 - 35926555
Alignment:
| Q |
267 |
tcagagagaatatgaagagtataaagtcagagttaatgctttggttgctaaggctcagaaaacaccagatgaagggtggactatgcaagatgg |
359 |
Q |
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| T |
35926647 |
tcagagagaatatgaagagtataaagtacgtgttaatgctatggtagctaaggcccagaaaacaccagaagaaggatggacgatgcaagatgg |
35926555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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