View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_42 (Length: 374)
Name: NF1863_low_42
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 32552803 - 32552459
Alignment:
| Q |
20 |
gactagtcatgtgagattgcatggtcaatattgtttttaattttatctataagacaaatttctcatttgatatgcccctaacatatgcaaagaagatctg |
119 |
Q |
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| T |
32552803 |
gactagtcatgtgagattgcatggtcaatattgtttttaattttatctataagacaaatttctcatttgatatgcccctaacatatgcacagaagatccg |
32552704 |
T |
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| Q |
120 |
gggaagattataaacaattgctt--gtgtaggaaatccggccatggacgcacatgatggaggttccacaacttcatggattcggaccagctgccaatcgg |
217 |
Q |
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| T |
32552703 |
gggaagattataaacaattgcttttgtgtaggaaatccggccatggacgcacatgatggaggttccacaacttcatggattcggaccagctgccaatcgg |
32552604 |
T |
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| Q |
218 |
ctattggaagcttacaaaatgcttttgaaggtaacctttccatgcttggctcacatcttaaaagtttaaagattccttacagaaattgagcaatgt-ttt |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32552603 |
ctattggaagcttacaaaatgcttttgaaggtaacgtttccatgcttggctcacatcttaaaagtttaaagattccttacagaaattgagcaatgttttt |
32552504 |
T |
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| Q |
317 |
taacctttctatcaaacattgctcaattttttctgctgttatttc |
361 |
Q |
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| T |
32552503 |
taacctttctatcaaacattgctcaattttttctgctgttatttc |
32552459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 17846115 - 17846232
Alignment:
| Q |
141 |
ttgtgtaggaaatccggccatggacgcacatgatggaggttccacaacttcatggattcggaccagctgccaatcggctattggaagcttacaaaatgct |
240 |
Q |
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| T |
17846115 |
ttgtgtaggaaatacgtccatggacacatatgatggaggttccacaactacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgct |
17846214 |
T |
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| Q |
241 |
tttgaaggtaacctttcc |
258 |
Q |
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| | ||||||| |||||| |
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| T |
17846215 |
tctaaaggtaatctttcc |
17846232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 20413350 - 20413467
Alignment:
| Q |
141 |
ttgtgtaggaaatccggccatggacgcacatgatggaggttccacaacttcatggattcggaccagctgccaatcggctattggaagcttacaaaatgct |
240 |
Q |
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||||||||||||| || |||||||| || |||||||||||||||||||| ||||| || |||||||||||||||||| ||||||| || ||||||||||| |
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| T |
20413350 |
ttgtgtaggaaattcgtccatggacacatatgatggaggttccacaactacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgct |
20413449 |
T |
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| Q |
241 |
tttgaaggtaacctttcc |
258 |
Q |
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| | ||||||| |||||| |
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| T |
20413450 |
tctaaaggtaatctttcc |
20413467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 5310490 - 5310607
Alignment:
| Q |
141 |
ttgtgtaggaaatccggccatggacgcacatgatggaggttccacaacttcatggattcggaccagctgccaatcggctattggaagcttacaaaatgct |
240 |
Q |
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||||||||||||| || |||||||| || |||||||||||||||||||| ||||| || |||||||||||||||||| ||||||| || ||||||||||| |
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| T |
5310490 |
ttgtgtaggaaattcgtccatggacacatatgatggaggttccacaactacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgct |
5310589 |
T |
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| Q |
241 |
tttgaaggtaacctttcc |
258 |
Q |
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| | ||||||| |||||| |
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| T |
5310590 |
tctaaaggtaatctttcc |
5310607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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