View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_49 (Length: 352)
Name: NF1863_low_49
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 33117403 - 33117715
Alignment:
| Q |
21 |
atgtagtcactcttattttacactt-----gatacccgtgcaattaccctccaaaattatacaaattaaatacagagacttcgtgaggaaaaggaatcaa |
115 |
Q |
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| T |
33117403 |
atgtagtcactcttattttacactttacttgatacccgtgcaattaccctccaaaattatacaaattaaatacagagacttcgtgaggaaaaggaatcaa |
33117502 |
T |
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| Q |
116 |
tcaagattgaaatacaactattagaatacgtggtttagtttaatacaaatctataaaaccaacttgtaaagtgagattgcacctatttataaacacatat |
215 |
Q |
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| T |
33117503 |
tcaagattgaaatagaactattagaataagtggtttggtttaatacaactccataaaactaatttgtaaagtgagattgcacctatttataaacacatat |
33117602 |
T |
|
| Q |
216 |
ttaagttatatctaattcaatgcgagactttttaacactctttcacgtccatcattattgagtttagcgtgtagatataaatagttggtagtccgataac |
315 |
Q |
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||||||||||||||||| |||| || | ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33117603 |
ttaagttatatctaatttaatgtgaaattttttaatactctttcacgtccatcattattgagtttagtgtgtagatataaatagttggtagtccgataac |
33117702 |
T |
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| Q |
316 |
aaaattctaatag |
328 |
Q |
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|||| ||||||| |
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| T |
33117703 |
gaaatcctaatag |
33117715 |
T |
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