View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_low_50 (Length: 350)

Name: NF1863_low_50
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_low_50
NF1863_low_50
[»] chr4 (6 HSPs)
chr4 (40-337)||(4908321-4908617)
chr4 (124-255)||(4902559-4902688)
chr4 (125-216)||(4916347-4916434)
chr4 (155-236)||(4896572-4896647)
chr4 (186-289)||(4938075-4938179)
chr4 (220-289)||(4984800-4984869)
[»] chr6 (3 HSPs)
chr6 (154-284)||(22009481-22009611)
chr6 (125-267)||(22055396-22055544)
chr6 (125-267)||(22020899-22021050)
[»] chr2 (3 HSPs)
chr2 (154-284)||(44309763-44309893)
chr2 (125-267)||(44365781-44365929)
chr2 (125-267)||(44331007-44331158)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 40 - 337
Target Start/End: Original strand, 4908321 - 4908617
Alignment:
Q  40 tccaacgaatattgtacacaactaaatccttaccactactacacgaaagattatccaaataaaattgtacacgaaaaatatttcaaaaaactatttgttc 139  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4908321 tccaacgaatattgtacacaactaaattcttaccactactacacgaaagattctccaaataaaattgtacacgaaaaatatttcaaaaaactatttgttc 4908420  T
Q  140 tcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttga 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4908421 tcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaataacaacttgttcactaaattccctttga 4908520  T
Q  240 gaattgttcttccaaacaatgagtgcttctcatagtgaataatttgttgtgnnnnnnnnngtcatcgtttgtattagttttaaaaatatattggctct 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||||||||||||    
T  4908521 gaattgttcttccaaacaatgagtgcttctcatagtgaataatttgttgt-tttttttttgtcatcctttgtattagttttaaaaatatattggctct 4908617  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 124 - 255
Target Start/End: Original strand, 4902559 - 4902688
Alignment:
Q  124 aaaaaactatttgttctcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacct---caacaacaacttg 220  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||||||||||     || ||||||||||||||||||||||   |||||||||||||    
T  4902559 aaaaaactatttgttctcaataatgacttctttatataatgttgaaacttacca-----ctactcttgtactcactttgaacctcaacaacaacaacttg 4902653  T
Q  221 ttcactaaattccctttgagaattgttcttccaaa 255  Q
    |||| ||||||||||| || ||||| |||||||||    
T  4902654 ttcaataaattcccttcgaaaattgctcttccaaa 4902688  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 4916347 - 4916434
Alignment:
Q  125 aaaaactatttgttctcaataatgattgctttatataat-gctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||     || || |||||| ||||||||||||||||||||||||    
T  4916347 aaaaactatttgttctcaataatgattgctttatataatggctgaaactta-----tcactactcttgcactcactttgaacctcaacaacaa 4916434  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 4896572 - 4896647
Alignment:
Q  155 ttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctt 236  Q
    |||||||||||||||||||||||     || |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  4896572 ttatataatgctgaaacttacca-----ctactcttgtactcactttgaaccttaacaacaa-ttgttcactaaattccctt 4896647  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 4938075 - 4938179
Alignment:
Q  186 ctcttgtactcactttgaacctcaacaacaacttgttcac--taaattccctttgagaattgttcttccaaacaatgagtgcttctcatagtgaataatt 283  Q
    ||||||| |||||||||||||||||||||||  | ||| |  |||||| |||| ||||||||||||| | |||||||||||||||||| |   |||||||    
T  4938075 ctcttgtcctcactttgaacctcaacaacaaactcttcgctataaatttccttcgagaattgttctt-ctaacaatgagtgcttctcacaaataataatt 4938173  T
Q  284 tgttgt 289  Q
    ||||||    
T  4938174 tgttgt 4938179  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 4984800 - 4984869
Alignment:
Q  220 gttcactaaattccctttgagaattgttcttccaaacaatgagtgcttctcatagtgaataatttgttgt 289  Q
    |||||||||| ||||||| |||| |||||||||||||||| |||| || ||| |  ||||| ||||||||    
T  4984800 gttcactaaactccctttaagaaatgttcttccaaacaataagtgtttatcacaaagaatattttgttgt 4984869  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 284
Target Start/End: Original strand, 22009481 - 22009611
Alignment:
Q  154 tttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttgagaattgttcttcc 252  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||||  ||||| |||||||||||  | ||||||||||||||||||||  ||||||||||    
T  22009481 tttatataatggctgaaacttaccactcctcacctcttgtactcatattgaatctcaacaacaaactcttcactaaattccctttgagtgttgttcttcc 22009580  T
Q  253 aaacaatgagtgcttctcatagtgaataattt 284  Q
     ||||| ||||||||||||||  |||||||||    
T  22009581 -aacaacgagtgcttctcataaagaataattt 22009611  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 22055396 - 22055544
Alignment:
Q  125 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaac 217  Q
    ||||||||||||||||||||| ||||      |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  22055396 aaaaactatttgttctcaatattgatattgattgctttatataatggctgaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 22055495  T
Q  218 ttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 267  Q
     | ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  22055496 ctcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 22055544  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 22020899 - 22021050
Alignment:
Q  125 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa- 216  Q
    ||||||||||||||||||||| ||||      |||||||||||||| | ||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  22020899 aaaaactatttgttctcaatattgatattgattgctttatataatggcagaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 22020998  T
Q  217 --cttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 267  Q
      ||| ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  22020999 ctcttcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 22021050  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 284
Target Start/End: Original strand, 44309763 - 44309893
Alignment:
Q  154 tttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttgagaattgttcttcc 252  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||||  ||||| |||||||||||  | ||||||||||||||||||||  ||||||||||    
T  44309763 tttatataatggctgaaacttaccactcctcacctcttgtactcatattgaatctcaacaacaaactcttcactaaattccctttgagtgttgttcttcc 44309862  T
Q  253 aaacaatgagtgcttctcatagtgaataattt 284  Q
     ||||| ||||||||||||||  |||||||||    
T  44309863 -aacaacgagtgcttctcataaagaataattt 44309893  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 44365781 - 44365929
Alignment:
Q  125 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaac 217  Q
    ||||||||||||||||||||| ||||      |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  44365781 aaaaactatttgttctcaatattgatattgattgctttatataatggctgaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 44365880  T
Q  218 ttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 267  Q
     | ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  44365881 ctcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 44365929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 44331007 - 44331158
Alignment:
Q  125 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa- 216  Q
    ||||||||||||||||||||| ||||      |||||||||||||| | ||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  44331007 aaaaactatttgttctcaatattgatattgattgctttatataatggcagaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 44331106  T
Q  217 --cttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 267  Q
      ||| ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  44331107 ctcttcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 44331158  T

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